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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_38_PI390587928Hv_44K_v2GCAAAACATGGATGAAAGCTTTGCTATATTGTGGACTAGCTCCGACTGTTTTGGCTGGAA621GeneList: darkolivegreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.7910.6870.9031.4771.3401.716
Raw 428.294554.937666.9091704.101548.986761.348



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35471013262e-24665 - 72410060 / 60plus ABC41270
MLOCMLOC_20017.214152e-24558 - 61710060 / 60minus ABC41270
MLOCMLOC_20017.114192e-24559 - 61810060 / 60minus ABC41270
JLOC1JLOC1_13882.215678e-25766 - 82510060 / 60plus
JLOC1JLOC1_13882.117358e-25934 - 99310060 / 60plus
Harvest21ABC204977263e-25664 - 72310060 / 60plus
Harvest35U35_78336853e-25622 - 68110060 / 60plus



Contig Sequence (685 bp)

>U35_7833 685 Hv_44K_v2
GCAGCCCCCACGCGCACGTCATCATAAAAAAATAAAAGAGCAACTCGCCGCCGACGCCGC
CGCCGCCGCCGCCGCCGGTCCTAGGGTTACCGGTGCCTCGCCGCTCCTCCGGACGGCCCT
CCGTCGCCGCGCTGCCCTCCCCGTTGGTCCGCCGCACCTTCAGCCGGGACCCCTCCTGCG
CCGCCGGCCGGAGCTGCTCCGCGACGCCGACCGGAGCAGATTGGGGAGCTGAGATCGGCA
TGGCGTGGTCGGCGAATCTGGAGACGATGGAGCTGGAAATCCTGGGCATGAACTTCGGCT
GCGTCCTCTCGGCGCTGGCGGACGCCAAGATCCCGGAGAAACAGTGCCTGCTCCCGCTCG
TCTCCAAGCTCCTCGGCTACTGCATCGTTGCCGCCTCCACCACCGTCAAGCTCCCGCAGA
TACTAAAGATTTTGAAGCATAGAAGTGTTAGAGGACTTAGTGTAGCCTCCTTTGAGCTGG
AGCTCATTGGCTACACAATTGCTCTGGCATATTGTATTCACAAAGGACTGCCCTTTTCAG
CTTATGGAGAGCTAGCTTTTCTGCTGATCCAAGCAATTATCTTGATTGGAATCATTTACT
ATTACTCGCCACCAATGGGAAGCAAAACATGGATGAAAGCTTTGCTATATTGTGGACTAG
CTCCGACTGTTTTGGCTGGAAAAAT



Homology of Contig U35_7833 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os07g29610.12452e-73protein|PQ loop repeat domain containing protein, expressed
Brachypodium v1_2None
Arabidopsis v10AT4G07390.12352e-52Mannose-P-dolichol utilization defect 1 protein | chr4:4195750-4197317 FORWARD LENGTH=235