barSeed - Barley Seed Development Database

Probe CUST_389_PI415269222

Source Contig TA46573_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_389_PI415269222	Hv_44K_v2	AGCAACGTTAAAACCCCTTACGTTCACTCCAATATATGGGTCTCGTTTCTGTTTCATGCC	564	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.011	2.167	1.293	0.628	0.187	0.197
Raw	150.199	244.728	131.339	104.091	10.488	12.373

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65709.3	1037	2e-24	817 - 876	100	60 / 60	plus	ABC16311
MLOC	MLOC_65709.4	1174	2e-24	150 - 209	100	60 / 60	minus	ABC16311
MLOC	MLOC_65709.1	1086	2e-24	186 - 245	100	60 / 60	minus	ABC16311
MLOC	MLOC_65709.2	1119	2e-24	186 - 245	100	60 / 60	minus	ABC16311
MLOC	MLOC_65709.5	1009	7e-23	1 - 57	100	57 / 57	minus	ABC16311
JLOC1	JLOC1_43255.1	708	8e-25	510 - 569	100	60 / 60	plus
Harvest21	ABC16311	647	3e-25	571 - 630	100	60 / 60	plus	ABC16311
Harvest35	U35_7551	647	3e-25	571 - 630	100	60 / 60	plus

Contig Sequence (624 bp)

>TA46573_4513 624 Hv_44K_v2
CGCCTGTCCCACCGGCCTCCGTGTCCACCGTCGGCGACCTGAGGAGCCTCGCCGCTTCGA
GCCTCGACTCGCTCAAGCGCCGCCTCGACGCGCTCCACGGCGACTCCGCCCGTGACCTCC
AGGCCTCCCACTCCCGAATCTCCAAGCGCATCAAGATGCAGACGCAGAGCTGCCTGCAGA
TGGCGGAGGAGGCGGAGAAGGAGCATAAGAAGATGGCCGAGAAGATCTCCGAGCGCGCCG
AGGAGATGAAGGCATCGTACAAGAAGTTCGTGACGGAGGTGCAGTCGTCTTCGTGTCGTG
TGTCCAAGGTGACCTTCCCTGAGATGGCAAAGTCCGTGACCAGAGCTATCGACGGCTTGC
GCAGTCGCTACAACATCCCAGCTACGACAGCTTAGCATACAGTTCAGTTCAGGCTGTGTC
TGCTACCTCTCTGAGTTGGTACATTCCCTTCTCCAGATCAAACCTGGCTGCTGAATTCCT
GGACCCGTGGCAGCAGAAAACTCACGCGTTTGTAATATAACTGCTACATTTACATCGCAC
ACTTTTTGCTACAGTCTCTTCGTCAGCAACGTTAAAACCCCTTACGTTCACTCCAATATA
TGGGTCTCGTTTCTGTTTCATGCC

Homology of Contig TA46573_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None