barSeed - Barley Seed Development Database

Probe CUST_38999_PI390587928

Source Contig U35_20136

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38999_PI390587928	Hv_44K_v2	CCTGGGGTGCCTAAAACAATAGAGCAACGAATCAAAATATGATGAACTGTTGAGAATAAA	1247	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.356	0.473	0.972	1.780	1.246	1.286
Raw	433.762	912.414	1632.913	4641.203	1152.534	1293.567

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_517.1	1630	2e-23	1 - 58	100	58 / 58	minus	ABC09937
MLOC	MLOC_517.2	3861	3e-21	1 - 54	100	54 / 54	minus	ABC09937
MLOC	MLOC_517.3	1645	3e-21	1 - 54	100	54 / 54	minus	ABC09937
JLOC1	JLOC1_315.2	1598	1e-23	1446 - 1503	100	58 / 58	plus
JLOC1	JLOC1_315.1	1845	1e-23	1693 - 1750	100	58 / 58	plus
Harvest21	ABC09937	1321	3e-25	1248 - 1307	100	60 / 60	plus	ABC09937
Harvest35	U35_20136	1321	3e-25	1248 - 1307	100	60 / 60	plus

Contig Sequence (1321 bp)

>U35_20136 1321 Hv_44K_v2
GCGGCCCGGTGGATCATACAACTTGCATGATCAGTCCTGGAAGGATCAGGGATGGAAGAG
CACGGTGAGCAGAGATGTTGGGAGGACCTATTGCCAGATGCCCTGGGGCTCATCTTCCGC
AACCTCTCCCTTCAGGAGATGCTCACCGTGGTTCCCCGGGTTTGCAAATCCTGGAGCCGG
GTGGTCTCAGGTCCCTACTGCTGGCAGGAGATCGACATCCAGGAGTGGAGCCAGCAGCAG
AACAAGCCTGACCAGCTCGCCCGCATGGTTCATACGCTCGTCACTCGCAGCGATGGCTCG
TTCCGCCGCATTAGCGTGTCCGGGCTTCCAAGCGACTCGTTGTTCACCTTCATCGCAAAC
CATGCGCGATCTCTCAAGACCCTGGAGCTTCCGAGGAGCGAGATCAGCGACTGCATAGTG
GAAGATGTTGCGCAAAGACTGTCCAACGTCACATTCCTGGACGTCAGCAGCTGCACCAAG
ATCGGCGCGCGTGCACTGGAGGCGTTCGGCAAGAACTGCAAGTCCCTCGTCGGGCTCCGG
CGGGTCATGCACCCCATAGACGTCGCCGGCAAGGTGTGCCAGCACGACGAGGCCCGCGCC
ATCGCCGGCAGCATGCCGAAGCTCCGGCACCTGGAGATTGGGTACATGCTGATCGCGACC
AACGCCGTGGTGGAGATCGCGTCCCGGTGCCACGACCTCAAGTTCCTCGACCTGCGCGGC
TGCTGGGGCGTGGACGACAAGCTCCTGCAGGAGAAGTACCCCGGGCTGAAGATCCTGGGC
CCCCGTGTGGACGACTGCTACGAGAACAGCTTCCTGGAGGAGTGCTCCGACGACTCGGAC
GACGACGACGACTCCATCTACTCATGGGAGGAGTTCATGGACGACGAGGACGACGACGAC
TACTTCGCCGCCGAGGCCCTGTGGCACGACGACCACGCCCTCGAGGGGCTTGAGGTCAGG
TTCTATGGCGGCGGGTTCGGCGAAGGCGAAGGCTTTGCCGGCTTCGACTGGCCAGAGTCC
CCATGAATCAAGCCGTCTGCCTGCATCAAATAAGTTACCGAGAGAAGTGGAGTGCCTCTG
CTTGCTTGCTTGCTTGCTCCTGCTGCTATCTTTATAGCATGTTCCAACTTTGGAGCATCT
TCTTCCGTGTCCATGTGCTTGTAATTGTGTCAAATTGTGTTGCTATCTCTAGCTGCTTGC
AGATATTGGCCTGGATGTTGTGTGAGCTTTGTCTGGAATGTAAAAAACCTGGGGTGCCTA
AAACAATAGAGCAACGAATCAAAATATGATGAACTGTTGAGAATAAAAAAAAAAAAAAAA
A

Homology of Contig U35_20136 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g11630.1	318	2e-157	protein\|OsFBX192 - F-box domain containing protein, expressed
Brachypodium v1_2	Bradi1g45630.1	320	3e-163
Arabidopsis v10	AT4G08980.1	317	2e-93	\| Symbols: FBW2 \| F-BOX WITH WD-40 2 \| chr4:5758993-5760108 FORWARD LENGTH=317