barSeed - Barley Seed Development Database

Probe CUST_38985_PI390587928

Source Contig U35_24321

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38985_PI390587928	Hv_44K_v2	AACCAAAAGCATTTGAGGAGCAGAAGCAAAATGAGGATCGGATGTATGGATCAACATATT	738	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362485	3911	2e-24	735 - 794	100	60 / 60	plus	ABC12672 ABC22302
MLOC	MLOC_7022.4	3385	2e-24	362 - 421	100	60 / 60	plus	ABC12672 ABC22302
MLOC	MLOC_7022.1	3733	2e-24	602 - 661	100	60 / 60	plus	ABC12672 ABC22302
MLOC	MLOC_7022.2	3692	2e-24	640 - 699	100	60 / 60	plus	ABC12672 ABC22302
JLOC1	JLOC1_4623.1	4003	8e-25	616 - 675	100	60 / 60	plus
Harvest21	ABC20087	800	3e-25	739 - 798	100	60 / 60	plus
Harvest35	U35_24321	802	3e-25	739 - 798	100	60 / 60	plus

Contig Sequence (802 bp)

>U35_24321 802 Hv_44K_v2
GCCTTGGCGGTAGCCCCCTTTCCAATCTACCTCACCAACGCGGAGAGGAAGAAGCATCTT
CTTCTAATACTTCTATAGCCAGCCCCGCCGGCCCCCCGACGGAGCCGATTCGATTCGATC
CCCTTGGAATCTAGCCGTGGTGCTGCGGCGCGCGGGGACACGGAGGGCCGGCGAAGATGC
ACAGGAGCAAGGGGAAGCTGTCGGGCGTCCTGAGCAAGGGCTTCAAGCCCGACAAGTGCA
AGATTGCCCTCAAGATGGCCATGGCGCGGATCAAGCTGCTGCGGAACAAGAAGGAGGTGC
AGGTGCGCCAGATGCGCCGCGAGGTCGCGCAGCTGCTCGACGGAAACCAGGACCAGACCG
CGCGCATCAGGGTTGAACATGTCATAAGGGAAGAGAAGTTCATGCAAGCATATGACCTGA
TCGAAGTGTACTGCGAACTTATAGTGGCACGCATGTCCATTATTGATTCACAGAAGACTT
GCCCTATTGATCTGAAGGAGGCAGTAGCGAGTGTTATATTTGCATCAATGAGATGTTCAG
ATGTCACAGAACTAGCAGATGTTCGGAAGAATTTCACAAGCAAGTACGGGAAAGAGTTTG
CCGCATCAGCTCTTGAAGTGCGGCCTGACAGCGGCGTAAACCGTCTGGTAATCGAGAAGC
TCTCAGCAGGAGCACCGGATGTACAGACTAAAACCAAAACCTTGAGCTCAATCGCGGCAG
AGCACAACATAAAATGGGAACCAAAAGCATTTGAGGAGCAGAAGCAAAATGAGGATCGGA
TGTATGGATCAACATATTCTGG

Homology of Contig U35_24321 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g51010.1	1102	4e-112	protein\|DUF292 domain containing protein, expressed
Brachypodium v1_2	Bradi2g47747.1	1130	5e-126
Arabidopsis v10	AT2G19710.1	937	6e-75	Regulator of Vps4 activity in the MVB pathway protein \| chr2:8506339-8509817 FORWARD LENGTH=937