barSeed - Barley Seed Development Database

Probe CUST_38984_PI390587928

Source Contig U35_24322

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38984_PI390587928	Hv_44K_v2	GATGTGAACTTCACATTTGTTGCTTCTGTCTTCTGAATGAATGGATGTGAACTTGAATCA	928	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39511.3	2196	6e-24	2093 - 2151	100	59 / 59	plus	ABC43048
MLOC	AK359272	1953	9e-22	1899 - 1953	100	55 / 55	plus	ABC43048
JLOC1	JLOC1_25765.3	1742	1e-23	1685 - 1742	100	58 / 58	plus
JLOC1	JLOC1_25765.2	1986	1e-23	1929 - 1986	100	58 / 58	plus
Harvest21	ABC43048	624	2e-22	25 - 83	98	58 / 59	minus	ABC43048
Harvest35	U35_24322	1004	3e-25	929 - 988	100	60 / 60	plus

Contig Sequence (1004 bp)

>U35_24322 1004 Hv_44K_v2
GAGATCCACTAAAGAGCACCACTTGAGCTATCTCTCGTTTGCTCCACCTGAGCTGTCATT
TGACAAGTTCCAGGCAGACGAGCAAGGTTGGGTCGACACCATCAAATCTGTGAATTCTGG
GGGAATGGTGAGGATAAGTACTATGGATTGGCTTGGACAATCGCAATATGCTTCTCAAAC
TGTGTTCTGGCCATCTTTATCGTCAGCAATATCAGAGGTAATATTCTCCAAGAATGCAAC
AGTGAGGCTGCTGGTAGCCTACTGGACACACTTCATCCCGAGCACCGAAAAGTACTTGAA
GAGCCTCCTTTACTCAAACATCCTCTGCGCATCCTCCAAATACAACCACTGTGGCGGCAA
GGGTCGAGGTCAAGTACTACTTGGTTCCCGGGGTACAACGAGACCGGTCCCGCCCTGTCT
CAGGGCGCCCCGACGGGGAACTGTTACCCCGGCTTCACCCGGGTGAACCATGGCAAGTAT
GCCGTCAGCGATGTGAGGGCGAACATCGGCACCAGCAACCTCATCTGGGATTACTTCTAC
ACGACGGCTGGAGTGAGCTTTGGAACGTACAATCCCTCCATCGTCTCGCAGCTGCAAGAA
GTCTTCGATGCGGACTGGGATTCTCCCTACACCATGCCGGTTAAGCCTCTGGAGGCATCC
AGGTGATCAGATCAGTTCACTAATTTTTCTCAACCTGTTGTCAGGAAAGAACATCTGGCC
TTGTCTTGCTGCGGGCCTGATGAATGCAACGGTTTAACAAAAAAATCGACTTGTTCATTT
TATTTGCTTATTAGTCATGTAACTCATAGTTGTCTTGTTTGGTTAGTACATTGTAATGCC
TTGTAACTGTCATCCAATAGGAAATTGTGGCTGTGACCTGCTAGTGGTGTATTAGTTGTA
TTGTTAGCTGTGAGCTTCACATATGTTGGATGTGAACTTCACATTTGTTGCTTCTGTCTT
CTGAATGAATGGATGTGAACTTGAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_24322 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g44060.1	513	3e-105	protein\|phospholipase D. Active site motif family protein, expressed
Brachypodium v1_2	Bradi1g30930.1	507	1e-100
Arabidopsis v10	None