barSeed - Barley Seed Development Database

Probe CUST_38981_PI390587928

Source Contig U35_24326

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38981_PI390587928	Hv_44K_v2	GACGAAACCAGTAAAGTACCTTCACAATGATCTTCTCAAGATCAGATGTGATATGACGGT	612	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.253	0.349	1.269	2.400	0.977	1.108
Raw	26.887	55.957	185.064	581.888	78.415	98.125

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68652.1	1578	2e-24	781 - 840	100	60 / 60	minus	None
JLOC1	JLOC1_45434.1	1645	8e-25	659 - 718	100	60 / 60	plus
Harvest21	ABC49294	636	3e-25	577 - 636	100	60 / 60	plus
Harvest35	U35_24326	672	3e-25	613 - 672	100	60 / 60	plus

Contig Sequence (672 bp)

>U35_24326 672 Hv_44K_v2
GAGCAGTCGACAGCCGAGCACATCCCTGCGTCGCCACGCCTGCGGGCTCCGGGGCCGCTC
CGCCGTCAGACGCGTGACCTACTCGCCTAGTCCTCGTCTGATCTCCGCCGCCTCCGCCAC
CGACCGCCGCCCTCGCGTCCAGGGCTCCCGGCGTTCTCCATCCCCAACTCCCCGCACAAC
CTACAAAAGCTGCAGGATGGAGTCAGCATCCAAGGAGACTGCATCGAGGTGCACCAAGGA
GAAGGTGACGGCATCGAGGTGCACCACGGACAAGGAGAAGGGAGCGCACATCTTTGAGAT
TGCCGGGTACAGCCTCAAGAAGGACATGGGTGTAGACAAGTTCGTCCGGTCAACCATCTT
CACTGTCGGTGGGTATGACTGGTCCATCAGATTTTACCCCAAAGGTACCTACGAGTCACC
CGAAGGGTGTATGGTGATCTGTCTTGAGCTCATGAGCAGCAATGCTGAGGTGCGGACATT
CTTTCAGCTTGGATTGGTAAAGCACGAGACTGGGTTGGTTGGCTCAATGTTTTCCCAAAA
TAATAAGGTGTTCAGCTTCAAGACCAGGAACACTCGTCAGTATCATCTGTTCATACTAAC
AAGCAGTCTTGAGACGAAACCAGTAAAGTACCTTCACAATGATCTTCTCAAGATCAGATG
TGATATGACGGT

Homology of Contig U35_24326 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None