barSeed - Barley Seed Development Database

Probe CUST_38974_PI390587928

Source Contig U35_36308

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38974_PI390587928	Hv_44K_v2	CAGTTGGACATGTTCAGTAGCATAATCTAATGCCATACTCTTCCTTTATAAAACGGTATT	48	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.129	1.420	1.048	0.743	0.679	0.587
Raw	35.537	32.910	24.033	23.441	8.434	7.901

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_36308	491	3e-25	49 - 108	100	60 / 60	minus

Contig Sequence (491 bp)

>U35_36308 491 Hv_44K_v2
GGCGAATTGGGCCTTTCAGAAAATGCTCGAGCGGCCGCTAATTACTCAAATACCGTTTTA
TAAAGGAAGAGTATGGCATTAGATTATGCTACTGAACATGTCCAACTGAGAGGCCTTTGA
TACATCCTCCAACGCTGAAATCGTACGTTAAGATTCGCAAACATCTCGCAAGTAAATAAA
CAAATGGTACACAAGAGGAAGAAACTCAATGAAGAAAATGAACCATGCATGATTTACAGA
TAGGCACAAGCAAATAAAAAACTCACCAGATCTAAAATGCCACTCAGGCGCTGAAGGATG
CGCTTTATCACTAATATGATAGCAACTTCTTGAATCTGATCCCAATAAGTGGGACCTATT
TTTGGGGAGGTTCCTGGAAATATTTCAGATAACAAACTTGTAGCCTCATCGAGGAGTAAT
CGACACATATCCCCTGACCTAGCAGAAGTTGCAGCAACATCAATGCAAAGCAGAATCGTA
GTTAAAGGACC

Homology of Contig U35_36308 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None