barSeed - Barley Seed Development Database

Probe CUST_38973_PI390587928

Source Contig U35_12350

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38973_PI390587928	Hv_44K_v2	ACTTGGTACAGCGAAAATGGTGAGTCGGTTCCTCCGCGGAGTTGCTCTCTCGGTGTTGGT	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15383.1	2713	2e-24	931 - 990	100	60 / 60	plus	ABC13984
JLOC1	JLOC1_10551.1	2206	8e-25	395 - 454	100	60 / 60	plus
Harvest21	ABC34826	599	3e-25	14 - 73	100	60 / 60	plus
Harvest21	ABC34574	376	2e-21	19 - 77	97	57 / 59	plus
Harvest35	U35_12350	600	3e-25	15 - 74	100	60 / 60	plus

Contig Sequence (600 bp)

>U35_12350 600 Hv_44K_v2
AGTCTACTCCAGTAACTTGGTACAGCGAAAATGGTGAGTCGGTTCCTCCGCGGAGTTGCT
CTCTCGGTGTTGGTGGTCGCGGCGCTCGCTGCCGGCGCGGCGACGGCAGCGGCCTCGCAG
CAGTCTTGCCCGGCTACGCCGCCGGACGCGGGGGCGACGCTCCAAGTGTCGCACGCGTTC
GGACCATGCTCCCCGCTGGGAAACGCGGCCGCAGCGCCGTCGTGGGCGGGGTTCCTCGCG
GACCAGTCCTCCCGGGACGCGTCGCGGCTGCTGTACCTCGACTCCCTCGCCGTGGCGGGG
CGCGCGTACGCGCCGATCGCGTCCGGGCGGCAGCTGCTCCAGACGCCGACGTACGTGGTG
CGCGCGCGCCTCGGCACCCCGCCGCAGCAGCTCCTCCTCGCGGTCGACACCAGCAACGAC
GCCGCGTGGATCCCCTGCTCCGGCTGCGCGGGCTGCCCCACCACCACCCCCTTCAACCCG
GCCGCGTCCAAGTCGTACCGCGCCGTGCCGTGCGGATCGCCGGCGTGCTCGCGGGCGCCG
AACCCGTCCTGCTCGCTCAACACCAAGTCCTGCGGTTTCAGCCTCACCTACGCCGACTCC

Homology of Contig U35_12350 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46480.1	450	2e-98	protein\|eukaryotic aspartyl protease domain containing protein, expressed
Brachypodium v1_2	Bradi1g19070.1	461	4e-57
Arabidopsis v10	None