barSeed - Barley Seed Development Database

Probe CUST_38966_PI390587928

Source Contig U35_12359

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38966_PI390587928	Hv_44K_v2	TTCGGTCTCTTACAAATACTTCCCAAATGCTCATGATCTTGCTGCTGAATCCGACGTGCT	595	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371301	1490	2e-24	602 - 661	100	60 / 60	plus	ABC16574
MLOC	MLOC_45847.1	195	3e-22	12 - 67	100	56 / 56	minus	None
JLOC1	JLOC1_29727.1	192	1e-22	6 - 61	100	56 / 56	minus
Harvest21	ABC25408	658	3e-25	596 - 655	100	60 / 60	plus
Harvest35	U35_12359	658	3e-25	596 - 655	100	60 / 60	plus

Contig Sequence (658 bp)

>U35_12359 658 Hv_44K_v2
GGGTTACAACTCTCGAGCTCGCGGCTATGTCGGCAGCCGGCGGCAAGCCGCACGTCCTGC
TGCTCCGTCCCGTCGACGCGGCCTTTGCCGCCGCGCTGCGCGACCGCTACCGCGTCCTCG
ACCTGTACGCGCTGGGACAGACCCTCCCGGTCCTGGCCTTCGTCGCCGCGGCCGCCGCCG
TGCCGGAGCCCCCGCGCGCCACGGTCATCTGGGCCGGCGTGCGCGTGGACGCCTCGTTCC
TCGATACCGCCCCTTCCCTCCGCTGTGTCGTCAGCACGGCCGCCGGGCTCGACCACATCG
ACCTGGCCGAGTGTGCGCGCCGCGGCGTCGCCGTCGCCAACTCCGGGGAGGTCTACTCCA
CCGACGTCGCCGACCACGCCGTAGGCCTGCTTCTCGACGTGCTCCGGCGCGTGTCGGCGT
CCGAGCGGTACGTCCGGCGCGGGTCCTGGCCGGCGCAGGGGGATTATCCTCTCGGATCTA
AGCTTGGTGGCAAGCGTGTTGGCATCATCGGCTTGGGGAACATCGGCTCACGGATTGCAA
AGAGGCTTCAAGCTTTTGGCTGCATCATCCACTACAACTCGAGAAAACCAAAGGATTCGG
TCTCTTACAAATACTTCCCAAATGCTCATGATCTTGCTGCTGAATCCGACGTGCTCGT

Homology of Contig U35_12359 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g01600.1	330	2e-88	protein\|erythronate-4-phosphate dehydrogenase domain containing protein, expressed
Brachypodium v1_2	Bradi5g02150.1	332	2e-101
Arabidopsis v10	AT2G45630.2	338	9e-52	D-isomer specific 2-hydroxyacid dehydrogenase family protein \| chr2:18796000-18797089 FORWARD LENGTH=338