barSeed - Barley Seed Development Database

Probe CUST_38962_PI390587928

Source Contig U35_24333

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38962_PI390587928	Hv_44K_v2	CTCAACTTGATGTCATGCCAGGCTAACTCATTTTGATTCACTGTAGGTTTTTTACTAAAA	645	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.792	1.581	1.077	0.803	0.299	0.289
Raw	3580.477	4925.630	2969.773	3537.663	454.536	479.700

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57691.1	1890	2e-23	27 - 84	100	58 / 58	minus	None
JLOC1	JLOC1_37424.2	1879	1e-23	1752 - 1809	100	58 / 58	plus
JLOC1	JLOC1_37424.1	1777	1e-23	1650 - 1707	100	58 / 58	plus
Harvest35	U35_24333	718	3e-25	646 - 705	100	60 / 60	plus

Contig Sequence (718 bp)

>U35_24333 718 Hv_44K_v2
GTCCGAGCTGGTGGGCGCAAGTCTGGCGGCCGGAAGCTCCTAAAAGGCATCATCCCTCCA
TACACAGTTCCGGACGAGAAGAGAGAGAACCACATTCCATCAACTGCGCCATATAGTCTC
GCCGAATGTGTTCATGACCTGCTCCACCTTGCTGCGAGAATGCTGGTGGTCGGCGGCAGG
CTCGTCTTCTTCTATCCAATGCTGCGGGAGGACGATGCTGCTGGTGCGGCGAAATTCCCG
GAGCACCCCTGCTTCAAGCTGGTCTCCTCCTGCGAGCAGATCCTAAGCCTGCGGTACAGC
CGGGTTCTGTTGACCATGGTGAAGGTGGGGCCCTACACGGAGGAGGTGGAGAGGATGGGC
GAGGAACGGCACCAGGAGTTCAGGGAGAATCACCAGAAATGGATGGAGGAGGGCAACCTG
CACTCTGCTGTGTTCAGCCCGGCGGAGCATGATAAGAAGTCTGAATCTGATAGAGGTTCC
AAGCCCAAGTACAGAGGCAAGTACGTGTAGTGATGAAAACACTCTGGGGTCGATGACAAT
TTTGTTGATCTTCTGTTGTTTGTATCTCTCAGTGATGGTTCTTGTATGGCTTGTTCTAGG
TTTACAAGCTAGCGCCAATTAGTGCAAGGAATTGTATGCTGAACTCTCAACTTGATGTCA
TGCCAGGCTAACTCATTTTGATTCACTGTAGGTTTTTTACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_24333 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g35060.1	481	8e-82	protein\|RNA methyltransferase protein, putative, expressed
Brachypodium v1_2	Bradi3g45810.1	476	9e-89
Arabidopsis v10	AT3G26410.1	477	4e-64	\| Symbols: TRM11, AtTRM11 \| methyltransferases;nucleic acid binding \| chr3:9669508-9671273 REVERSE LENGTH=477