barSeed - Barley Seed Development Database

Probe CUST_38961_PI390587928

Source Contig U35_24334

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38961_PI390587928	Hv_44K_v2	TTTGTCATTTTGGCTTGGAAGAGTTAAAGCAATGTGACTCCTCGGGCATTCCTTCAACGG	585	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60274.2	3019	2e-24	1374 - 1433	100	60 / 60	minus	ABC14442
MLOC	MLOC_60274.1	4097	2e-24	1398 - 1457	100	60 / 60	minus	ABC14442
MLOC	MLOC_60274.6	2997	2e-24	1364 - 1423	100	60 / 60	minus	ABC14442
MLOC	MLOC_60274.3	4054	2e-24	1377 - 1436	100	60 / 60	minus	ABC14442
MLOC	MLOC_60274.5	4124	2e-24	1367 - 1426	100	60 / 60	minus	ABC14442
MLOC	MLOC_60274.4	3399	2e-24	1367 - 1426	100	60 / 60	minus	ABC14442
JLOC1	JLOC1_39289.4	4131	8e-25	2699 - 2758	100	60 / 60	plus
JLOC1	JLOC1_39289.3	4128	8e-25	2699 - 2758	100	60 / 60	plus
JLOC1	JLOC1_39289.2	3794	8e-25	2362 - 2421	100	60 / 60	plus
JLOC1	JLOC1_39289.1	4075	8e-25	2651 - 2710	100	60 / 60	plus
Harvest21	ABC20963	648	3e-25	586 - 645	100	60 / 60	plus
Harvest35	U35_24334	648	3e-25	586 - 645	100	60 / 60	plus

Contig Sequence (648 bp)

>U35_24334 648 Hv_44K_v2
TCACCATGAAAATGGTGCGCCAAGAAGGAAGGTCATCTGAAGGTGCTCTACCTGTATCTT
CTCAATCTGATGTTCAGATTTCTAATTGCTTGAATGGCATTTCCCAAGAGAATCTATTGA
GTAGGTCAGGTCATATGCACAAAGATCAGAATACCAATAGAGCAAATGATCCACATGTTG
CTGTGAGCACACAAGGTGTGAAGAATATGGATGCTTGCATGCTGCCAGGTATGCCCGGTG
AGACAGCTCACTCATTGCTTTTGCAGCCAACGTGGGATAATGACTTGTTTGATATATTTG
GTTCTGAATTTCATCAGTTGGGTCATAATGTGGATGCTAATTTGGTGTCCTCCTGTGATG
CAAAATCTCATAGTTTAGATAGAGATGCAACTGAACCCTCGATTTGTCTTGATTCTTCGT
CACTCTTCAGTTCACTAGACAATGATTTTCCCTGTTCTGGGATCTTCTCACTAACTAATA
CTGATCAATTACTGGATGCTGTCATCTCAAATGTCAACCCCAGCAGTAAGCAGAGTTCTG
ATGACAATGCTTCTTGCAAGACTGCATTGACTGACATTCCAAACATTTGTCATTTTGGCT
TGGAAGAGTTAAAGCAATGTGACTCCTCGGGCATTCCTTCAACGGTAA

Homology of Contig U35_24334 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g06010.1	903	2e-53	protein\|helix-loop-helix DNA-binding protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None