barSeed - Barley Seed Development Database

Probe CUST_38957_PI390587928

Source Contig U35_24338

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38957_PI390587928	Hv_44K_v2	GATTATTCTCTCCTAGTGTCCTACAAAAAATCAAATGTAAACAATCGGTATCTCCGTGAT	1282	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.715	2.290	1.070	0.621	0.675	0.333
Raw	303.216	401.050	162.743	156.925	64.621	31.158

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54749.2	1773	2e-24	13 - 72	100	60 / 60	minus	None
MLOC	MLOC_54749.1	2494	2e-24	37 - 96	100	60 / 60	minus	None
JLOC1	JLOC1_35252.1	2089	8e-25	1954 - 2013	100	60 / 60	plus
Harvest35	U35_24338	1379	3e-25	1283 - 1342	100	60 / 60	plus

Contig Sequence (1379 bp)

>U35_24338 1379 Hv_44K_v2
GAGAGCAATTATTTCCCCTTCAGATCCTGTGTATGTGGCGACACAGAAAATGCGGGAGTT
TCGAGTTAATTCAGTGGTGGTCACTACAGGGAACACAGTGCAGGGGATCTTTACGTCCAA
AGATGTTCTTATGCGTGTTGTGTCACAGAATCTTTCCCCAGAGTTGACCTTGGTAGAAAA
GGTGATGACTGCAAACCCTGATTGTGCTACATTAGACACGACAATTCTTGACGCACTACA
TATAATGCATGATGGCAAATTCTTGCACATTCCTGTTCTTGACAGAGAGGGGCAAATTGC
TGCTTGCCTGGATGTCCTGCAGCTTACCCATGCAGCCATTCAATTGGTTGAAGGGGGCAA
TGGGACTGCTAATGACGTGGCAAACTCAGTAATGCAGAGGTTCTGGGACTCTGCGCTTGC
TTTGGAGGCTCCAGATGACGAATTTGATAGCCGTAGCGAAGCATCCTTACTTATGGCGTC
AGAAGCTGGGGATGGACGGAGTAGTATATACCCCCCTATCATTGGTAATTCGTTTCCCTT
TAAGCTTCAAGACCGGAAGGGACGTGTGCATAGATTCACTTGTGGCTCGGAGAGCTTAGA
TGAGCTTGTCTCCTCTGTAAGGCAAAGATTGAGTATTATTGATGAAAAGGACATCATTCA
AATCTTGTACGAAGATGATGAGGGCGACCGGGTGCTGCTGACAACGGATACTGATCTTGC
TGGCGCTGTGCTCCATGCCAAATCATCTGGGTTGAAGGTTCTCAAGTTGCATATCGAGGA
CGAGTCAAATCCAAACACAGAGGCGGTAAAACCATTACAGGAGCTAGCACCTCGCAGCAG
GAATGGTGTGTCTTCTGTTAAAATTGGGCTCATGGCTGGTGCAGTTGCTCTCAGTGGCAC
GGCAGTCATGGTGTACTTGAAACGGTCCAGGGTGTGATTACCAGATGAATCAGTACTTTC
CTAAACCCGCATCTCAACAGCTGACATCCATCCACTTTAGAAACTATTGTTATCTTGGTA
TCATTGCATACTAAGAAAAGAAAGAACGAGTCACATGAGGTCACATGTTTCCAGTCTGTC
AGGCAATTGAAAGGTCGAACATCAGGCGGTAGGAGCTGCCTACATTTGTCCCGCCACCAC
ATTTTGCACAAACATCAGTGATTTCATGGGTCATGGCTACGGTGAAATGTATAAACACAA
GTGTTTATACTAGTTCATACTTTTGCACCTTTTTGTAGATAAACAGAGGATTTAAAATCA
TTTTGGAGGATACCATTAAGTGGATTATTCTCTCCTAGTGTCCTACAAAAAATCAAATGT
AAACAATCGGTATCTCCGTGATATTAATATATACTCTTTATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_24338 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g07190.1	543	7e-165	protein\|CBS domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi4g41527.1	544	0.0
Arabidopsis v10	AT3G52950.1	556	1e-100	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein \| chr3:19634866-19636536 FORWARD LENGTH=556