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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_38954_PI390587928Hv_44K_v2TGCCTTTCAAATAAGAATGGTGAGCCCATTGTCTCGGATAAGCTGGATTCCACATCAGCT628GeneList: brown4
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.7181.3061.4320.6870.3600.382
Raw 34.44534.70239.59827.9194.2505.686



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK37675944173e-21947 - 10079759 / 61plus ABC34490
MLOCMLOC_58085.131193e-212141 - 22019759 / 61minus None
MLOCMLOC_58085.232663e-212087 - 21479759 / 61minus None
JLOC1JLOC1_37707.133952e-21926 - 9869759 / 61plus
Harvest21ABC528466933e-25629 - 68810060 / 60plus
Harvest35U35_506026933e-25629 - 68810060 / 60plus



Contig Sequence (693 bp)

>U35_50602 693 Hv_44K_v2
GCTCTGTAAGATATGGAGATTTTGTTGATGACAATGATGGTGGGTCACCTCTTATTGACA
GAGTTGAGGCGCCAGATGCTATCGATGGCAAGGCAAGTGCAGCTCATGGATCCACTCTCT
GTAAAAATAAGACCCGTGCGTCCACATCAACCGCTGCAGATATCTGATGCAAGCTATGGA
CTGCGGGTTGATGCACTAGTGGAAGGATCCTACTGGGAGGGTGTCATTGCTGATCACGCA
GAAGGCTCCATGCAGAAGAAGGTCTTTTTTCCTGATGAAGGTGATGAACGCGTTATGGCA
GTCAAACGACTACGCTGAACTCAGGACTGAGGATGAGATTACTGGTACATGGAAACCGCG
CGGAATCTCGGCTCGTTTCTCCAAGTGCTTATGTCACATGAAGAGAAGAGCGTGGCTTAC
CTGTATCACTCATGCACATATGGTATGACCTGACATCAATTCTTTCCTTGACGTCCGGAG
ACAATATGTGGATGTGTGGAACAGAATCTTTTTGGGAGGGATCACTTGCAGCCCTTATTG
CAGAATTACAGTCTGTATGTGACAGACCTCCCCAAGATGGAAATCAAACAGGAGATTCTT
GTAGATCAGCAGAAACTTCAACATCTGCTGCCTTTCAAATAAGAATGGTGAGCCCATTGT
CTCGGATAAGCTGGATTCCACATCAGCTGCTAT



Homology of Contig U35_50602 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None