barSeed - Barley Seed Development Database

Probe CUST_38951_PI390587928

Source Contig U35_50605

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38951_PI390587928	Hv_44K_v2	AACTACTGGAACTCGTACCTCAAGAAGCGCGTCGAGGGCGCGCGGTCACCAGCGAAATCC	373	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.089	0.096	1.017	1.924	1.466	2.202
Raw	3.288	5.979	79.049	233.384	66.437	104.955

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73614.1	1614	7e-23	676 - 735	98	59 / 60	plus	ABC12178
JLOC1	JLOC1_49011.2	1166	4e-23	239 - 298	98	59 / 60	plus
JLOC1	JLOC1_49011.1	1467	4e-23	540 - 599	98	59 / 60	plus
Harvest21	ABC52850	450	3e-25	374 - 433	100	60 / 60	plus
Harvest35	U35_50605	450	3e-25	374 - 433	100	60 / 60	plus

Contig Sequence (450 bp)

>U35_50605 450 Hv_44K_v2
GTCCTCCAACTCCGGTGCGGGCGGCATTTCCACCGTGGTCACCTCCGACGAACTGATGGG
GTGCAAGTCGTGCCAGAAGCCCAAGGCGCAGCACCGCAAGGGGCTGTGGTCGCCGGAGGA
GGACCAGAAGCTCCGCGACTTCATCGTCCGCTACGGCCACAGCTGCTGGAGCACCGTCCC
CGTCAAGGCCGGGCTTCAGCGGAACGGCAAGAGCTGCAGGCTGAGATGGATCAACTACCT
GAGGCCGGGGCTGAAGCACGGCATGTTCTCCCGGGAGGAAGAAGAGACCGTCATGAGCCT
CCACGCCGCTCTCGGCAACAAGTGGTCTCAGATAGCGCAGCACCTGCCGGGCCGGACGGA
CAACGAGGTGAAGAACTACTGGAACTCGTACCTCAAGAAGCGCGTCGAGGGCGCGCGGTC
ACCAGCGAAATCCGCCGGCTCGGGCGCGCC

Homology of Contig U35_50605 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g45020.1	274	3e-82	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi5g16672.1	286	5e-88
Arabidopsis v10	AT5G52260.1	268	1e-62	\| Symbols: AtMYB19, MYB19 \| myb domain protein 19 \| chr5:21220165-21221223 FORWARD LENGTH=268