barSeed - Barley Seed Development Database

Probe CUST_3894_PI390587928

Source Contig U35_1287

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3894_PI390587928	Hv_44K_v2	AACGCTAAACATTGCCCTTGAGCTTGTTCAACTATACTATACAAGACGGCTGTGCACTGG	1394	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.359	1.389	1.092	0.935	0.386	0.368
Raw	3220.967	5095.123	3540.150	4737.877	699.932	720.734

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_10955.1	1282	8e-25	1065 - 1124	100	60 / 60	plus
Harvest21	ABC04268	1484	3e-25	1404 - 1463	100	60 / 60	plus	ABC04268
Harvest35	U35_1287	1475	3e-25	1395 - 1454	100	60 / 60	plus

Contig Sequence (1475 bp)

>U35_1287 1475 Hv_44K_v2
AGGAAAGTAGACCGAGCCGAGCCCCAAACGAAATCGAATCGAGAGGAGAGAAAAGGGAGA
GGAGCACGCGCCGCCGCCAGGCCAGCACATCGCCATGGCCGCCTCCTCCCGCCGCGCGTC
CCAGATGCTGGGCTCCGCCGCCTCCCGCTTCCTCCATTCGCGGGGCTACGCGGCCGCCGC
CGCGCCCTCGCCGGCGGTGTTCGTCGACAAGAGCACCCGCGTGATCTGCCAGGGCATCAC
CGGGAAGAACGGCACCTTCCACACCGAGCAGGCCATCGAGTACGGCACCAACATGGTAGG
TGGAGTTACTCCCAAGAAAGGTGGAACTGAGCACCTAGGCCTTCCAGTTTTCAACTCAGT
AGCAGAAGCTAAGGCCGAGACAAAGGCCAATGCATCTGTTATATATGTTCCACCACCATT
TGCTGCTGCTGCAATAATGGAGGCATTGGAAGCAGAGCTTGACCTTGTTGTCTGCATTAC
TGAAGGGATACCTCAGCATGACATGGTGAAAGTGAAGGCTGCTCTGAACAGGCAATCAAA
AACCAGACTGATCGGACCAAACTGCCCTGGTATCATTAAGCCCGGTGAATGTAAGATTGG
AATCATGCCAGGTTACATCCACAAACCAGGACGCATTGGAATAGTATCTCGTTCTGGTAC
CTTGACATATGAAGCGGTGTTTCAAACAACAGCCGTAGGCTTGGGGCAGTCAACTTGTGT
GGGCATGGGTGGTGACCCCTTTAACGGCACTAATTTTGTTGACTGCCTTGAAAAGTTTGT
GGATGATCCTCAGACAGAAGGTATTGTTCTCATTGGAGAAATTGGAGGTACTGCTGAGGA
GGATGCTGCAGCCTTTATCCGGGAGAGCAAAACAGAAAAGCCTGTCGTTGCATTCATAGC
TGGACTTACTGCACCCCCGGGCCGTCGCATGGGCCATGCTGGAGCAATTGTGTCAGGGGG
CAAGGGTACTGCCCAAGACAAGATCAAGGCACTCAGGGAGGCTGGGGTAACTGTTGTCGA
GTCACCAGCTAAGATTGGTTCGACCATGTTTGAAATTTTCAAGCAGCGCGGGATGGTAGA
GTAGAGAGAAGAAATGGTACAGTAGAAAAGAAAACATCGGGAAACTTCTTTTTGTTGCTC
GTTGGTTAATAGCGAGCAATACGTCGGTAGTGCCCCCATCGCTGGCCGCTGAGCTGAGCT
ACTCAGTCCCTTTTTCCTTTTCCTTTCCCTGTCTTAAGTGTGAGACTGGCCCTTACGTGT
GCTCATTTCAAATGTTCAATAAGACATATTCTCGACATGCTATAAAAAAAAGTTGGAATT
CATGGGGTACCTAATGCTCTTTCAAGTTTTTCTTAATGGAAATCTTCAAATCTGGCTGTA
AAAAAAAAAAAAAAAACGCTAAACATTGCCCTTGAGCTTGTTCAACTATACTATACAAGA
CGGCTGTGCACTGGAATAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1287 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g38970.1	332	protein\|succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi1g23600.1	328
Arabidopsis v10	AT5G23250.1	341	Succinyl-CoA ligase, alpha subunit \| chr5:7830460-7832491 FORWARD LENGTH=341