- Probe CUST_38945_PI390587928
- Source Contig U35_50608
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_38945_PI390587928 | Hv_44K_v2 | CATTTATGCCCCTGTGTGATGTGTGTTTAATTGTAATAAAAAGCCTCAAAGTATTTTCCG | 18 | GeneList: lightgreen MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.775 | 0.639 | 0.690 | 3.268 | 6.693 | 18.623 |
Raw | 4.134 | 4.672 | 6.299 | 51.033 | 39.017 | 119.027 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest21 | ABC52853 | 327 | 3e-25 | 19 - 78 | 100 | 60 / 60 | minus | ABC52853 |
Harvest21 | ABC52775 | 332 | 8e-21 | 21 - 78 | 97 | 56 / 58 | minus | ABC52775 |
Harvest35 | U35_50608 | 327 | 3e-25 | 19 - 78 | 100 | 60 / 60 | minus |
Contig Sequence (327 bp)
>U35_50608 327 Hv_44K_v2 TTTTTTTTTTTTTTTTTACGGAAAATACTTTGAGGCTTTTTATTACAATTAAACACACAT CACACAGGGGCATAAATGCATACAATCGATGGGCCCTTTGATCGATGCCCCATGCTTATT CATGATCAACCTAGTCGTTATAACTTAAGACAAAACCCCTCCTTATCCGGGCTGAATTTC GGGGCAAAACGGGCTGCCGGGGATGGCCCATAGGTTGCCCTCCTGCGGGGGAACAAGGTT GGCGGCGAACCTCGTTTGCCTCTCCCTAGGGCAGTGGGGCGTGTCCTTAAAGAAGGCCCC CTAAAACCCCCCCTGCCAAGTTACTAC
Homology of Contig U35_50608 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |