barSeed - Barley Seed Development Database

Probe CUST_3893_PI390587928

Source Contig U35_1288

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3893_PI390587928	Hv_44K_v2	GGATCTGGTTGGTATTGTATGCAAGGGATCTGGATCATCATTTTTTGATTGGCCAAAAAA	1904	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.009	2.062	1.123	0.805	0.259	0.355
Raw	113.034	178.823	85.480	92.194	11.736	16.573

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_1288	1975	3e-25	1905 - 1964	100	60 / 60	plus

Contig Sequence (1975 bp)

>U35_1288 1975 Hv_44K_v2
GGTTTAAAATCCTTGATTAAAGGAGTGCTTGAAATGGCGAAGGAGCCATCACGACTATGT
GTTGAAGAGGTACACCGTGTATTGTTAGACATAGTAAATGCTACTGCAAATGGCACACCA
GGACTCGGAAGATATCCTCCGTTCAAACGCGAGATCATTACAATTGCATCTAATGCGTTG
GATACATTCAAAAGTGATGCAAAAAAGATGGTGGTTGCACTCGTTGATATGGAGCGTGCC
TTTGTCCCCCCACAACATTTCATCCGTTTAGTACAAAGAAGAATGGAAAGGCAGCGTCGT
GAGGATGAGGTGAAAACTAAATCATCTAAGAGAGCACAAGATGCTGAGCAATCCATGAAC
AAGGGTTCTGAGCAATCTGGTGGTAGCCTGAAGTCGTCAAAAGACAAATCCAATCAGCAA
GATAAAGATACGAAAGAGGGACCTAATCTGCAGGTTGCTGGTCCTGGTGGCGAAATAACT
GCAGGTTACCTATTGAAAAAGAGTGCAAAAAACAATGAATGGAGCAAAAGGTGGTTTGTC
CTAAATGAGAAGAGTGGAAAGCTTGGCTACACCAAGAAACAAGAGGAGAGACATTTTCGA
GGAGTCATTGTCTTAGAGGAATGTAACCTGGAAGAGATAGAGGAGGAAGAGCTTTCTAAA
ACTTCTAAGGATTCAAAGAAGGCAAATGGGCCAGAGAAAGGCCCAAGTCTCTTATTTAAG
ATTACTAACAGGGTTGCCTACAAAACTGTGCTGAAAGCTCATAGTGCCGTTATATTGAAG
GCTGAGAGTATGGCTGACAAGATTGAATGGGTGAAGAAGATAAAAGGTATTATTCAGAGC
AAAGGTGGGTCTGTCAAGAGTTCAAATACTCCTGAGGGCGGTTCCATGAGACAAAGCCAT
TCAGATGGATCTCTTGATACGATGGCCCGGAGGCCTGCTGATCCTGAAGAAGAACTCCGA
TGGATGTCTCAAGAAGTTCGCGGTTATGTCGAGGCTGTGCTGAACAGTTTGGCAGCAAAT
GTTCCAAAGGCTATTGTGCTTTGCCAAGTGGAGAAAGCAAAAGAAGATATGCTAAACCAG
CTGTACAGCTCAATAAGTTCACAAAGCAATGCAAGGATTGAAGAACTTCTCCAAGAGGAC
CACAATGCTAAGCGTAGACGGGAAAAGGCCCAAAAACAATCGACTCTTCTGTCGAAACTT
ACTCGTCAGCTCAGTGTCCATGATAACAGAGCTGCAGCTGCATCATATTCTGACGATACT
TCTGGTCCAGAGAGTGGCCCACAGAGCCCTAGCCAGTCGGGTGAGGACTGGAGGTCTGCC
TTCAGTGCTGCAGCAAATGGCTCTGCCGACCGATCCAGTTCACAGAACGAGTCAAGATCG
AGAAGTGCTGACAGTCGGGGCCGGCGGTATGAAAATGGGGACGCCAATGGTGCCAATTCA
GGCAGCCGACGCACACCAAATCGGTTGCCACCTGCACCGCCGAAATACTAAGGATGTTGA
TTGGCAATGTGAGAATCATATTTTTCATGGCATGCTCTCACTCCCTTGTGATATTGATGG
GAAAACAGACTGGGATGAAGAATAGAGAGCTGGCGAGAGATCGCATGAATGGTGTGTATC
CAGAGGACCTCAGTTGTTTATAGAAATATGTAGGTTATGTATGGTGATTGTTACGCGATC
ATTTTGCTATATTGATCAGTCTGATGCTCTCTCGGCCTGTGAGATTTTGTTGCCACATAT
CAGTTGATCTTGGTTCTGAACTCTGTTGTTGTAACTTGTAAGTCTTCCATCAAACTTGCA
ATGTATCATTTTCACCCATTGGTGTATTATATTCCTTCCATTCTTTTTGACCTCACGAGA
TTCGTGTTTTTAATTCGAGCTGATATGTTGGTATTGTATGCAAGGGATCTGGTTGGTATT
GTATGCAAGGGATCTGGATCATCATTTTTTGATTGGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1288 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50550.1	924	0.0	protein\|dynamin, putative, expressed
Brachypodium v1_2	Bradi3g59800.2	922	0.0
Arabidopsis v10	AT1G10290.1	914	2e-174	\| Symbols: ADL6, DRP2A \| dynamin-like protein 6 \| chr1:3370774-3377120 FORWARD LENGTH=914