barSeed - Barley Seed Development Database

Probe CUST_38934_PI390587928

Source Contig U35_12367

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38934_PI390587928	Hv_44K_v2	CAAACCATGTGACTTTGTGCAACTGATGACAAAATTAAACATGAAACCTTTCTTCCGAAA	616	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.301	1.582	1.421	1.060	0.354	0.327
Raw	327.749	640.743	490.126	572.242	65.633	67.480

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54560.1	1305	2e-23	238 - 295	100	58 / 58	minus	None
JLOC1	JLOC1_35120.1	1237	1e-23	172 - 229	100	58 / 58	minus
Harvest35	U35_12367	689	3e-25	617 - 676	100	60 / 60	plus

Contig Sequence (689 bp)

>U35_12367 689 Hv_44K_v2
GGCCCACCACACACTGCCCACTCAGCATCCTCGAGCTCGGTTCCGGGACCGGCGCCGCGG
GCCTCGCCCTGGCGGCAGCCCTCCCAGCGCACACCGTCCTCTCCGACCTCCCCGCCGCGC
TCCCCAATCTCCGCCACAACGCCTCCCTCAACGTGCCCCTCCTCGACTCCCGCGGCGGCT
CCGTCTCCGTCGTGCCGCTCCCCTGGGGCGATGCCGCCGCCATGGAGGCCGTGGTGGCCC
CAGCGCCGGCGTCTCGGTTTGACCTCGTCGTGGCGTCGGACGTGGTCTACTACGAGGAGT
TGGTTGACCCCTTGATAGAGACGCTGCGGTTCTTCGTGAAGAGCGATGTGGTGTTCCTGA
TGGCGCATATGAGGAGGTGGAAACGCACGGATAAGAAATTCTTCGGGAAGGCCAGGAAGG
TGTTCGACATTGAGGTGTTGCACAAGGATCCACCCCCGGAAGGCTGGCGCCATGGTCCGG
TGGTCTACCGCTTCACAGTGAAGAAGCAGCGTGTCAGGAAGTGAAGAAGCAGCTTCCAAA
AGGTAATGGATGTATGCTTGCTTATGCCCATGCTGATTCTACTGCACTGCTAGAGTTAAA
CACAAAATGTTTCTCGCAAACCATGTGACTTTGTGCAACTGATGACAAAATTAAACATGA
AACCTTTCTTCCGAAAAAAAAAAAAAAAA

Homology of Contig U35_12367 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g38220.1	267	7e-78	protein\|expressed protein
Brachypodium v1_2	Bradi1g24170.1	238	3e-82
Arabidopsis v10	None