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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_38931_PI390587928Hv_44K_v2CAGGTCAGGCACTTATTAACTTAGAGCATCTCCAACAGAAGCTCTTTCCCCGATAAAAAA601GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.2841.1941.2130.9740.3130.249
Raw 50.23468.72365.47180.5699.4937.968



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC147356973e-25602 - 66110060 / 60plusABC14735
Harvest35U35_243406973e-25602 - 66110060 / 60plus



Contig Sequence (697 bp)

>U35_24340 697 Hv_44K_v2
GCGAAAACTCTATATTCCGGTTTCTACGACTGATGAGGGTCGTGACATGTGGCAAGTGTA
CTTGGATATGAAGGCATATGCTGTTGCTCTGTCCCATTGCCTTAACTCTTTCCAGAGGGA
CCAAGTTTATCTAGTGCAGGCTGATGCTGCATTTGCTGCAAAAGAATATTACATAGCAGC
TTCGTTCTATGCAAAGATGAACTATATTTTATCATTTGAAGAGATCAGTTTAAAGTTTAT
ATCCATAGGTGAGCAGGATGCTCTCAGGACTTTCTTATTGAGAAGGCTTGATAACCTCAC
CAAAGATGACAAGATGCAAATAACGATGATCTCGACTTGGGCTACTGAGCTGTACTTAGA
TAAGATAAATCGACTCCTATTGGAAGATGGCACAGGCGCTACTACAAATACAGTAACAAA
TTCCAACAGCTCGGCATATCGTTCAGTAGTAGATGAATTCCGTGCATTTCTCAGTGATAG
CAAAGATGTACTAGATGAAGCAACAACAATGATACTACTGGAAAGTTATGGCAGAGTGGA
TGAGCTGGTGTATTTTGCTGGTTTGAAGGAGCAGTATGAAATTGTGGTTCATCATTACAT
TCAGGTCAGGCACTTATTAACTTAGAGCATCTCCAACAGAAGCTCTTTCCCCGATAAAAA
AAATCAGATGTTGGGGTAGTTGAGCAAAAAAAAAAAA



Homology of Contig U35_24340 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os08g08060.110013e-93protein|vacuolar protein sorting-associated protein 18, putative, expressed
Brachypodium v1_2Bradi3g15520.19923e-96
Arabidopsis v10AT1G12470.19886e-76zinc ion binding | chr1:4251359-4257201 FORWARD LENGTH=988