barSeed - Barley Seed Development Database

Probe CUST_38927_PI390587928

Source Contig U35_24344

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38927_PI390587928	Hv_44K_v2	AAGTTGGTAGCTCACATGCAAATGGCCTTGATGAATGCAGCTCTGTTCAAGGAGAAGATC	840	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.702	1.099	1.972	1.297	0.860	0.453
Raw	12.384	26.948	47.614	44.697	11.718	6.342

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54940.2	5678	2e-24	3795 - 3854	100	60 / 60	plus	ABC15671
MLOC	MLOC_54940.1	6168	2e-24	4285 - 4344	100	60 / 60	plus	ABC15671
JLOC1	JLOC1_35397.1	5952	8e-25	4102 - 4161	100	60 / 60	plus
Harvest21	ABC21134	918	3e-25	841 - 900	100	60 / 60	plus
Harvest35	U35_24344	918	3e-25	841 - 900	100	60 / 60	plus

Contig Sequence (918 bp)

>U35_24344 918 Hv_44K_v2
ATTTTGCAGCTCATCTTGCATGAGGTCAACTGCTTAAGGAGTACAATATCGGATGCCCAG
GATGTGAGACAGAAAGAACTTGTTGAGAAGTCACTTGTTGTCACACTTCTGGAGCACTTT
GGGCAGGAGGTGGCCGATCTGCGGTCCGAGCGCAACATCCTCAAGCAAGACCAGCAAGCA
AAGAGCGAGGAGTTGCTCCTGCTGCAGGCAGAAAGGCAGGAGCTTGCGGAGATCAGCGAT
GAGTTCTGGGAAGAGATGGAGTCTCGTAACCAGAGAGTTGACGACTTGAGAGCCGAGGCG
AAGTTCTTGGTTGGACAGTTGTCAGAACTTCAAGATTCTCGGAGGTCACTGCAGAGTGAG
ATTATAAAGCTGATTCAACAAAATTCTTTGCTGGCAAATGAATTGCATGACTCCAGGGAG
AAAGAGATGATCTTTGAAGATGATTTCAGGGTTCTCATGAGCGAAGCCGTTAGCAAAGAT
ATCCTTCTTGTGATATTTAGAAGCCTTCATGAAGACAGGTCCCTGGAGTTGAAGTCTTTG
CATGATGATTTTGTGTCTCTCCAAGCTGTAGGAAGTGAGCTTTGTAAGGACATCAGGATG
ATGAACAAGAAGCTTGATAATTTTGAATTCCTGGATAACCACCTCGGCAAAGATACAACC
ATGAGCATTTGTGACCGGTCTAGTGGAGAAAATAATCACACAGAAGTTGACGACGCTGGC
CTTCAGGAATCAAATGAAATGCTACTGGAGGAGATACTCAAGTTACATGGAAATGTGGAA
ATGCTTATTAGCAAGGAGAAGTCTTCTGTCGACATCAGATCCTGCAATGAAGAGATCACA
AAGTTGGTAGCTCACATGCAAATGGCCTTGATGAATGCAGCTCTGTTCAAGGAGAAGATC
GTCGAGCTCATCGTAACA

Homology of Contig U35_24344 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g43684.1	1536	5e-118	protein\|KIP1, putative, expressed
Brachypodium v1_2	Bradi4g23910.1	1532	9e-123
Arabidopsis v10	None