barSeed - Barley Seed Development Database

Probe CUST_38922_PI390587928

Source Contig U35_24349

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38922_PI390587928	Hv_44K_v2	GAACGGAGGTGTATGGAAATGTTGGATCCTCTGTTCTTGTTTTTCACTAAGAGTTATGTC	521	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_28210.1	564	2e-24	496 - 555	100	60 / 60	plus	ABC19202
MLOC	MLOC_28211.2	1745	2e-24	496 - 555	100	60 / 60	plus	ABC19202 ABC21322
MLOC	MLOC_28211.1	1851	2e-24	508 - 567	100	60 / 60	plus	ABC19202 ABC21322
JLOC1	JLOC1_18958.2	1880	8e-25	1316 - 1375	100	60 / 60	minus
JLOC1	JLOC1_18958.1	1729	8e-25	1165 - 1224	100	60 / 60	minus
Harvest21	ABC19202	605	3e-25	25 - 84	100	60 / 60	minus	ABC19202
Harvest35	U35_24349	605	3e-25	522 - 581	100	60 / 60	plus

Contig Sequence (605 bp)

>U35_24349 605 Hv_44K_v2
GACGACGACGGCGGCTCCCTGTCGCCGCCGCCGCCGCGCCAGGCGTGCTGCTTCCCCTTC
TCGCCCAAGAAGGCCCCGACGGCGAGGAGCAGGAAGGACCGCGCCGCCGGAGGAACGATG
GGCGACGTCCTCGGCATCGACGCCGGCGAGTGGGGCGACGAGAACAGGAGGGTGGTCACG
GAGCTCAAGGAGCAGCAGCGCAAGCTCAAGAAGGCGCTCGAGGAGCAGGTCAAGGTCAGC
AGGGAGACGGCCAAGATGGCGCGCTGGGTCAAGCAGGCCTCCGCGCGCATGACGCACACC
GACGCCATTGACGACCTGCTCAGCGACATAGACGACGACGAGGAGCTCAAGTGAAGAGAA
ATCTGCTCTGCTTTCCTTGTCTTCGGAAGCTCCTTTTGGAAATTTCCCTGGCTTTGGACA
AACAAACTATATACATGAAGATGTTTAGCCTGCAATGCATAGTAGTTATATATGAGTTGG
ACTTGATCAGAAAGAAGGATATAAATTCTGCTGTTTTAGACGAACGGAGGTGTATGGAAA
TGTTGGATCCTCTGTTCTTGTTTTTCACTAAGAGTTATGTCTAAAATTAAAAAAAAAAAA
AAAAA

Homology of Contig U35_24349 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None