- Probe CUST_38909_PI390587928
- Source Contig U35_12371
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38909_PI390587928 | Hv_44K_v2 | TACCATCGGCTGACTGCTAATGCATACAGTCTTCTTGCTGTAGTTCTTTACCATACTGGA | 153 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.150 | 0.349 | 1.661 | 1.389 | 1.557 | 0.912 |
| Raw | 12.204 | 40.966 | 184.690 | 213.035 | 94.384 | 63.309 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60591.2 | 3821 | 2e-24 | 2835 - 2894 | 100 | 60 / 60 | minus | ABC06105 ABC11912 |
| MLOC | MLOC_60591.6 | 3862 | 2e-24 | 758 - 817 | 100 | 60 / 60 | minus | ABC11912 |
| MLOC | MLOC_60591.5 | 4015 | 2e-24 | 873 - 932 | 100 | 60 / 60 | minus | ABC11912 |
| MLOC | MLOC_60591.3 | 5905 | 2e-24 | 2785 - 2844 | 100 | 60 / 60 | minus | ABC06105 ABC11912 |
| MLOC | MLOC_60591.4 | 5897 | 2e-24 | 2777 - 2836 | 100 | 60 / 60 | minus | ABC06105 ABC11912 |
| JLOC1 | JLOC1_39532.2 | 6129 | 8e-25 | 3201 - 3260 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39532.1 | 5165 | 8e-25 | 2245 - 2304 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC22913 | 212 | 1e-24 | 154 - 212 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_12371 | 213 | 3e-25 | 154 - 213 | 100 | 60 / 60 | plus |
Contig Sequence (213 bp)
>U35_12371 213 Hv_44K_v2 ATAGTTCCTGTATGCAAGCATGTCGTCTACTCATCTATTGATAGTCGAAACTTACTAGAA TCATCAAAGATGGCTTTGGACAAAGGAAAGCTTGATGATGCTGTTAACTATGGAGCAAAG GCCTTGTCCAAAGTTATAGCTGTTTGTGGTCCATACCATCGGCTGACTGCTAATGCATAC AGTCTTCTTGCTGTAGTTCTTTACCATACTGGA
Homology of Contig U35_12371 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |