barSeed - Barley Seed Development Database

Probe CUST_38908_PI390587928

Source Contig U35_48300

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38908_PI390587928	Hv_44K_v2	TTGGCATCGCTATATGTTTGCAAACCTAATGTACTAACTCAATATTACTACTTGGGTCAT	-1	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370669	4073	3e-21	3794 - 3853	97	59 / 61	plus	ABC25030
MLOC	MLOC_4644.2	1325	3e-21	9 - 68	97	59 / 61	minus	ABC25030
MLOC	MLOC_4644.1	3641	3e-21	146 - 205	97	59 / 61	minus	ABC25030
JLOC1	JLOC1_2920.2	3618	2e-21	3352 - 3411	97	59 / 61	plus
JLOC1	JLOC1_2920.1	3633	2e-21	3367 - 3426	97	59 / 61	plus
Harvest21	ABC49908	678	1e-23	15 - 75	98	60 / 61	minus
Harvest21	ABC25030	705	6e-22	599 - 658	97	59 / 61	plus	ABC25030
Harvest35	U35_48300	678	1e-23	15 - 75	98	60 / 61	minus
Harvest35	U35_26107	705	6e-22	599 - 658	97	59 / 61	plus

Contig Sequence (678 bp)

>U35_48300 678 Hv_44K_v2
ATATATACATTAACATGANCCCAAGTAGTAATATTGAGTTAGTACATTAGGTTTGCAAAC
ATATAGCGATGCCAATAGCCTACAAGTGAGGGGCTTGAGACTTCGTAGTGAATCCAACTA
CCACAGAACATTGGAAGCCGATTAGTTGACTGCCATGACCAAAGAGTTCTTCACAGTCGT
TTTCCCTGAATCAGGCACCTCTTCAGACAAAGCACGTCTATCATTTCTGTTTCGAAGGGA
CTGTTCGTGTCACAGTGGACACCCCATCCACAAATTTCGTTCGGAATATCACGTTGGCGT
TGTTGAACATACCCTCTTTTAGCGACACAACAATGAACTGGGACTGTGGAAAATGCGCCT
TTATCATTCTACCAATGTTTTGGGTATGGCTCAGATCAAGGGCAGCATCAACCTCATCTA
ATATGTAAAGCGGCGCAGGCTTAAAAAGAAGTAACGCCAGAATAAGACTAAGAGCAAGAA
GGGATCGCTGTCCTCCACTAAGTTCAGACAAAGATTGCTTCCAGACTGTTCCAAATGCCA
CCCGAACTTCAAGACCATCCAAGAAGGTACCACCTTCAGGAGGATCAAGCTTTGCCATTG
TACCAGGTAGAAGAGTACCGAATATAGACCCAAAATCCTTGTTAACTNTGAGCCATGTAA
CTTTCAAGGTCTCTTTCT

Homology of Contig U35_48300 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67740.1	1176	4e-81	protein\|chromosome segregation protein, putative, expressed
Brachypodium v1_2	Bradi2g57967.1	1176	2e-81
Arabidopsis v10	AT5G62410.1	1175	3e-73	\| Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 \| structural maintenance of chromosomes 2 \| chr5:25056308-25062436 FORWARD LENGTH=1175