- Probe CUST_38899_PI390587928
- Source Contig U35_12377
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38899_PI390587928 | Hv_44K_v2 | GGGGAAAGCAAGATAATGTCTGTTTAACTGTCGGTTCGGAATTTAAGTAAATGCAAATTA | 414 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.215 | 1.501 | 1.242 | 0.869 | 0.352 | 0.321 |
| Raw | 3274.357 | 6361.130 | 4577.633 | 4912.230 | 729.167 | 711.636 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_37417.1 | 440 | 7e-23 | 182 - 241 | 98 | 59 / 60 | plus | ABC25549 |
| JLOC1 | JLOC1_24229.1 | 463 | 4e-23 | 195 - 254 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC25549 | 497 | 3e-25 | 24 - 83 | 100 | 60 / 60 | minus | ABC25549 |
| Harvest35 | U35_12377 | 497 | 3e-25 | 415 - 474 | 100 | 60 / 60 | plus |
Contig Sequence (497 bp)
>U35_12377 497 Hv_44K_v2 CCAGAAGAAAAGGTGCNCAATGATAAAGCCTGGGAGGCAAGCAGCGAGGTCCCAAACGGC AAGCCTGATGATGAAGCAGAAGGGAACAATGGGTGGGGAGCTTGGNAACAGAATGCTAGC ACGTCGGCATGGTCATATAGAGCACAGAGAAGCAGCGCCCTTGGCCCGACGCTCGCGCTT CTGAGAGGCAAAAATGGCAGGGGAGCCGGTGGCAGGGCCGGTGGTGGCAGGGGAGCCGGT GGCAGGGGCGGCGGTGGCTGGGAAGGCGGTGGCAGGGAAGGTAAACCCACCAACTGGAAG TATGGCAAGTGATGCATGTGTTGGCACGGCGTGTTCGGGCGTCGCCGAGTCATTTTGTAT GCAATGCCTGGCCGAACGAAGATGGTGTCTGTTAGCAACTGTCAAACCATTCGGGGGGAA AGCAAGATAATGTCTGTTTAACTGTCGGTTCGGAATTTAAGTAAATGCAAATTATCATCC AAAAAAAAAAAAAAAAA
Homology of Contig U35_12377 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |