- Probe CUST_38895_PI390587928
- Source Contig U35_12379
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38895_PI390587928 | Hv_44K_v2 | ACGTGTACGAGCTGCGCTTTTTCGACCAGCTCCGGCAGATCAGTACGTTCGGTGCGTGGC | 333 | GeneList: lightcyan1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.081 | 0.195 | 1.004 | 2.654 | 1.725 | 1.793 |
| Raw | 4.712 | 24.135 | 105.951 | 418.642 | 107.006 | 116.932 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4722.2 | 1678 | 2e-24 | 671 - 730 | 100 | 60 / 60 | minus | ABC10435 |
| JLOC1 | JLOC1_2975.1 | 2051 | 8e-25 | 926 - 985 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26585 | 442 | 3e-25 | 334 - 393 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_12379 | 442 | 3e-25 | 334 - 393 | 100 | 60 / 60 | plus |
Contig Sequence (442 bp)
>U35_12379 442 Hv_44K_v2 CCCCGCAGCCTCTGTTGGTGGTGGTGACGACGACGGAGTCGACGCCTACGGCGGCCGGCG AGCGGGCGGCGATGCTGACCAGGATGGCGCACACCCTGCGGCTGGTGCCGCCGCCGCTGC TGTGGGTGGTGGTGGAGGCCGCCCCCGACGTGCCGGCGACGGCCAAGCTGCTGCGCGACA CGGGGATCCTCTACCGCCACCTGACGTACAAGGAGAACTTCACGGCCGCCGAGGCCGCCG CGGGCAAGGAGCGCCACCACCAGCGCAACACCGCGCTGGAGCACATCGAGCGGCACCGCC TCGCCGCCGTCGTCCACTTCGCCGGCCTCGGCGACGTGTACGAGCTGCGCTTTTTCGACC AGCTCCGGCAGATCAGTACGTTCGGTGCGTGGCCGGTGGCGAGGATGTCGCGGAACGAGC GGAAGGTGGTGATCCAGGGCCC
Homology of Contig U35_12379 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g17850.1 | 416 | 3e-69 | protein|glycosyltransferase family 43 protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g65750.1 | 366 | 3e-80 | |
| Arabidopsis v10 | None |