barSeed - Barley Seed Development Database

Probe CUST_3888_PI390587928

Source Contig U35_19943

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3888_PI390587928	Hv_44K_v2	TTTGTGTTTGAAGTTTTGGCCGTTGAATGGGAGTCGTGATTTGATTTATTGGAGGCAAAA	1244	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.069	1.242	1.212	0.985	0.461	0.468
Raw	2356.083	4056.673	3647.350	4533.103	778.614	842.977

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37399.1	2407	2e-24	44 - 103	100	60 / 60	minus	ABC05295 ABC15479
JLOC1	JLOC1_24218.1	2480	8e-25	2311 - 2370	100	60 / 60	plus
Harvest21	ABC15479	1317	3e-25	1245 - 1304	100	60 / 60	plus	ABC15479
Harvest35	U35_19943	1368	3e-25	1245 - 1304	100	60 / 60	plus

Contig Sequence (1368 bp)

>U35_19943 1368 Hv_44K_v2
GCTGACATTAACGCTTTATTTGGCTTTCGAATAGAGTGTATAGAGCGAATGGGCGAGAGA
GATGGCATCTGGACATGGCATCGTATGAATAGGTTATTTAACTGGCTTCCTTTGGCTGCA
CTCATAGAAAAGAAAATTATCTGTATGCATGGTGGCATCGGTCGCTCAATCAACCATGTA
GAGCAGATCGAGAATCTTCAAAGACCAATTACTATGGAAGCAGGCTCGGTTGTCCTCATG
GATCTTCTATGGTCTGATCCAACAGAAAATGATAGCGTTGAGGGGTTAAGACCAAATGCT
CGGGGGCCTGGTCTTGTTACATTTGGGCCTGATCGTGTTATGGAGTTCTGCAACAACAAT
GACCTTCAGTTAATTGTACGAGCGCATGAGTGCGTGATGGATGGCTTTGAGCGCTTTGCT
CAAGGCCACCTGATCACTCTTTTCTCAGCAACAAATTATTGCGGTACTGCAAACAATGCT
GGTGCAATCTTAGTTTTGGGTAGAGATCTTGTCGTTGTTCCAAAACTAATACATCCTTTG
CCTCCTGCAATCACATCACCTGAGACCTCACCAGATCAGATTGAAGATACATGGATGCAG
GAGCTGAATGCAAACAGGCCAGCAACTCCAACCAGGGGGCGTCCCCAAGCAGCGGCAAAT
GATCGAGGTGCTCTTGCGTGGATATAGTAGCTTTCATCAGACATTGGTTGATATGATCCA
TCTGAAGTCTTACTCAGCGGAATCTTGCCCCTTCTCTGCACATGAAAATGATTTATGTTC
GAGAGACTGGCGTTTAGCCCACAGCCATGCCAAAATAGAATCGTCTACAAGAAAGTGGAA
GTCACTACAAAGATGAGGAATGTAACTTCATCTAGGACAGCGCTAAGTATGAGCTCTCCA
AGCCGTTTCCCTAGCATGAGAAGTATGGCATATCAACTCAGAGATTCTCTGAAGATCCGC
TGAGGCTTCACTTGTATATACTCAGCTTGCCGGTGGATATAATGGGGTTGTATGTGTTTA
TTTTTTGCTTCCAATTGGAATGGCAAAAAGGAAATAGTGTTATTGTACTAGGTATTCTTT
CTGTTCCCTTTTGGGGGTGGGGGTCTAGGGTTCTCATTTTGCAAAGGTGTTGTTGAGTTG
CCACAGGGACTGGATCCTGCTCTAGTCGTGTATAATAGCTCTGCCTGCTACTTTTGTCCC
GGCATGCCCACTGTAATTTCAGCCTGCCGCTGATGTGTACAATTTTTGTGTTTGAAGTTT
TGGCCGTTGAATGGGAGTCGTGATTTGATTTATTGGAGGCAAAANGGGGTGTCACTTCGT
TGTTTTGGATGTGTATGAAATACCATTTACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19943 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g44500.1	1004	6e-152	protein\|serine/threonine protein phosphatase, putative, expressed
Brachypodium v1_2	Bradi1g13710.1	994	2e-156
Arabidopsis v10	AT2G27210.1	1006	1e-146	\| Symbols: BSL3 \| BRI1 suppressor 1 (BSU1)-like 3 \| chr2:11630188-11636182 FORWARD LENGTH=1006