barSeed - Barley Seed Development Database

Probe CUST_38889_PI390587928

Source Contig U35_24357

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38889_PI390587928	Hv_44K_v2	AAGGTTTTATGGTTTCATACCGCAGAAAAACATGCTGGATCAATAGTGATCTAAACGTTC	342	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56808.1	1635	2e-24	1356 - 1415	100	60 / 60	plus	ABC12729
JLOC1	JLOC1_36778.1	871	8e-25	594 - 653	100	60 / 60	plus
Harvest21	ABC25755	443	2e-22	343 - 400	98	57 / 58	plus
Harvest35	U35_24357	437	3e-25	343 - 402	100	60 / 60	plus

Contig Sequence (437 bp)

>U35_24357 437 Hv_44K_v2
GCAAGAAGAAAAACAGACACAAGAGTCATGGAAGGCCTGCTGCCCTTCCTGTACAGGGCC
ATCATCCTCCACTACGCCGATGGCTGGTGGCGGACGCCCACCGGCGACAGCCCCTTCCTC
GGCAGCGACTCACCATCGGCCCCACGGTACTACGTCCGCCTCACCGGCAGCCCCGACGAC
AACGGCCGTCTAGGCTTTGTTGCCGCTCCTCCAGCCAGACGTGGCGCGTTCATGTGATGG
AGTGAATGGATCACCATCTTCTCTCGTTTCCGGCTCCTTCTTCTTCTACTTCTTGGCGTG
CGTGTATGGTATGGATGACCTCAGGGTGTTGTAGTAGTACTTAAGGTTTTATGGTTTCAT
ACCGCAGAAAAACATGCTGGATCAATAGTGATCTAAACGTTCTTATATTCTTTTTTTATT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_24357 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None