barSeed - Barley Seed Development Database

Probe CUST_38888_PI390587928

Source Contig U35_50620

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38888_PI390587928	Hv_44K_v2	TATTGCACTGTAAAGCGGTATGAATTTGAGATGCACAGCAAGGTGTCAATGGCCTGGATC	276	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66784.1	3304	2e-24	1081 - 1140	100	60 / 60	minus	ABC00935
MLOC	MLOC_66784.2	3209	2e-24	1064 - 1123	100	60 / 60	minus	ABC00935
JLOC1	JLOC1_44045.1	3751	8e-25	2495 - 2554	100	60 / 60	plus
Harvest21	ABC52868	425	3e-25	277 - 336	100	60 / 60	plus
Harvest21	ABC00935	1848	3e-25	742 - 801	100	60 / 60	plus	ABC00935
Harvest35	U35_50620	425	3e-25	277 - 336	100	60 / 60	plus
Harvest35	U35_523	1930	3e-25	742 - 801	100	60 / 60	plus

Contig Sequence (425 bp)

>U35_50620 425 Hv_44K_v2
CCACAACAATCCCATCCCACAACAACCACAACCATACCCACAACAACCACAACCATTTCC
ACAACAGCCCATCCCACAACAACCACAACGTTCCTCATGGTACCAATAATGCTGCTGGTG
TGGAAGAGTCACTGGGTTCTTGTCGTCACCTTTATTGTGCTCTCGTTGATGGTAGAGCTA
CCATACTTCTGGGCTTGCATATTGAAGATCGACCAGGGCGGTTGGGTCCCGCTTGTCATC
GCGATAGCCTTCTTCGTCATCATGTATGTGTGGCACTATTGCACTGTAAAGCGGTATGAA
TTTGAGATGCACAGCAAGGTGTCAATGGCCTGGATCCTTGGTCTCGGTCCGAGCCTTGGT
CTAGTCAGGGTTCCAGGGATCGGCTTTGTGTACACTGAGCTGGCAAGTGGCGTCCCGCAC
ATCTT

Homology of Contig U35_50620 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g52390.1	792	3e-68	protein\|potassium transporter, putative, expressed
Brachypodium v1_2	Bradi5g21677.1	793	5e-69
Arabidopsis v10	AT1G31120.1	796	1e-54	\| Symbols: KUP10 \| K+ uptake permease 10 \| chr1:11104375-11107361 REVERSE LENGTH=796