- Probe CUST_38886_PI390587928
- Source Contig U35_24359
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38886_PI390587928 | Hv_44K_v2 | GAGGTGTTGGTGTGTCTATGTTTGTATTTCAACCTGGTTTATAAATAAATAATATGGCCC | 301 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.216 | 0.320 | 0.481 | 1.855 | 2.961 | 5.281 |
| Raw | 4.822 | 13.915 | 19.993 | 120.605 | 64.430 | 130.298 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252003.1 | 407 | 2e-24 | 340 - 399 | 100 | 60 / 60 | plus | ABC26496 |
| Harvest21 | ABC26496 | 393 | 3e-25 | 309 - 368 | 100 | 60 / 60 | plus | ABC26496 |
| Harvest35 | U35_24359 | 386 | 3e-25 | 302 - 361 | 100 | 60 / 60 | plus |
Contig Sequence (386 bp)
>U35_24359 386 Hv_44K_v2 GGAAGAAAGCAACATCCATCTCGGCAGAAACATGATGGCAAACAAGTACTCGGCCAGCTC GGTTCGGGTGATGCTGGTCCTCCTGGTTTTACTGGTTTTTGTCGGTACCATCCTCGGGCA ACGAGGTGGACCATCCACCTGCGATGACTCTGGTCCGATTCAGCAGAGCTGCCCGCCAAT CCGTGGTGGCTCATAAGTATGAGATGGACAATTTCTACGCAGCGGGATTTGGTAGGATCT CGCATTGGCCGGCGTAGGAAGCTTTCTCTTCTATGTGAACGATAATCTATACTATGATCT TGAGGTGTTGGTGTGTCTATGTTTGTATTTCAACCTGGTTTATAAATAAATAATATGGCC CATACATTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_24359 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |