- Probe CUST_38883_PI390587928
- Source Contig U35_50623
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_38883_PI390587928 | Hv_44K_v2 | GAACAACCATTTGCACAACAACCACCATTCTGGGAACAACAACCAGTTGTATCGCAGCAA | 239 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.178 | 0.149 | 0.239 | 3.796 | 14.765 | 27.892 |
Raw | 2.817 | 3.294 | 8.695 | 218.599 | 321.644 | 677.123 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest21 | ABC52871 | 311 | 3e-25 | 240 - 299 | 100 | 60 / 60 | plus | |
Harvest35 | U35_50623 | 311 | 3e-25 | 240 - 299 | 100 | 60 / 60 | plus |
Contig Sequence (311 bp)
>U35_50623 311 Hv_44K_v2 ACCCACAACAACCACAACCATATTGCACAACAGCGCCATCCCACAACAACCACAACCATC GTCCACAACAACCACAACGATACGCACAACAACCACGACCATTTCCACAACAACCGATCC CACAGCAGCCACAACCATACCCACAACAACGACAACCAGTGGCACAGCAAGCGATCCCAC AAGAACCACAGCCGTACCCACAACAACCACAACCGTTTACCGTACAACCCTTCCGATCAG AACAACCATTTGCACAACAACCACCATTCTGGGAACAACAACCAGTTGTATCGCAGCAAC AGCCATGTACA
Homology of Contig U35_50623 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |