barSeed - Barley Seed Development Database

Probe CUST_38882_PI390587928

Source Contig U35_50624

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38882_PI390587928	Hv_44K_v2	CCACAACATGTGACAAATAAATGTGCTCATGTAACCATCTATGAATAAAATTCCGCTTGT	512	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.010	0.010	0.453	1.963	2.731	5.544
Raw	17.273	51.067	5423.460	34904.233	17222.633	38672.433

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50165.1	757	2e-24	97 - 156	100	60 / 60	minus	ABC00216 ABC00231 ABC26710 ABC32343 ABC32779 ABC32916
JLOC1	JLOC1_32039.1	767	8e-25	107 - 166	100	60 / 60	minus
Harvest21	ABC52873	574	3e-25	513 - 572	100	60 / 60	plus
Harvest21	ABC32779	284	3e-25	190 - 249	100	60 / 60	plus	ABC32779
Harvest21	ABC00216	609	3e-25	509 - 568	100	60 / 60	plus	ABC00216
Harvest35	U35_50624	574	3e-25	513 - 572	100	60 / 60	plus
Harvest35	U35_14664	625	3e-25	531 - 590	100	60 / 60	plus

Contig Sequence (574 bp)

>U35_50624 574 Hv_44K_v2
TTGGAAGAGCCTGTCGCCGAGGAATTCCAGGAGGAAGATGTTTCCGACGGAGATTCAGAC
TCGAACGACGAGAGTAAGGGGCCGGAAGTAAAGCTTTTCATCAGCGGAGTAGTTCATAAT
AAAGAGGAGGTGGTTCTCAACAATGCCCACAAGAGCGGCCAAACCTAGGTTCTTGCAAGG
ATTACGTGATGGAGCGGTGTTTCACGATGAAGGATTTTCCAGTTACCTGGCCCACGAAGT
GGTGGAAGGGAGGCTGTGAGCATGAGGTTCGGGAGAAGTGTTGCCAGCAGCTGAGCCAGA
TAGCACCACATTGTCGCTGCGATGCTATCCGGGGAGTGATCCAAGGCAAGCTCGGTGGTA
TCTTTGGCATTGGGGGAGGTGCTGTATTCAAACAAATTCAGAGGGCCCAGATCCTCCCCT
CAAAGTGCAACATGGGCGTCGACTGTAGGTTCCCTAGTGGCTATTACTGGTGATGATATA
GCCCCTATTTGTGACCAATAAACTGTCACATACCACAACATGTGACAAATAAATGTGCTC
ATGTAACCATCTATGAATAAAATTCCGCTTGTAT

Homology of Contig U35_50624 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None