barSeed - Barley Seed Development Database

Probe CUST_38865_PI390587928

Source Contig U35_48315

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38865_PI390587928	Hv_44K_v2	GTAGTGTCTTACATGCTGCTATTTCTTTCTCTATTGGCGGCATGTAAGTTTTTGTTTTAA	-1	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.102	1.689	1.050	1.271	0.586	0.481
Raw	230.460	297.197	156.168	309.876	47.841	43.766

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC49951	687	1e-23	1 - 61	98	60 / 61	minus	ABC49951
Harvest35	U35_48315	687	1e-23	1 - 61	98	60 / 61	minus

Contig Sequence (687 bp)

>U35_48315 687 Hv_44K_v2
TTAAAACAAAAACTTANCATGCCGCCAATAGAGAAAGAAATAGCAGCATGTAAGACACTA
CAAAATTCTTGAATGTGGCTACAGAATATCAAACTCCAAACAGTGTAGAATTTAAACTAG
AGGTTTCTATCTGCAGACTTACAATCTATCTTCAAAGAGTATCACAGTAAACAAAAAGCC
AGGAAAACATGCTGAAAGGCAGACATGAACATCGATTCAGACGGCAACATCACTATTTCT
TCAGACCCGCAAGCGGCACAATCCTTACAGAGGGTGTAACATCGTGGCGCTAACTACATA
CAGAATGCCACCATCAATTCGTCCATGCGATGCAAGGAAGACGCCTAGGAGGAGGTGAAC
TTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACG
AGGCGGACGGAGGTCTGGATCTCCCGGGACGTGATGGTGGGCTTCTTGTTGTACCTGGCG
AGCTTGGCGGACTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATG
GACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGCACCTGCTTGAGCACCTTGAAGATG
TAGATCTTGTACGTCTCCACGCTCTTCTTGGACTTCTTCTTGCCCTTCTTCTCGCCTCCG
GCGCCTTCCTTGGACGCCGGCACCTTC

Homology of Contig U35_48315 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g38300.1	151	2e-54	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g00510.2	126	1e-55
Arabidopsis v10	AT5G22880.1	145	9e-54	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145