barSeed - Barley Seed Development Database

Probe CUST_38860_PI390587928

Source Contig U35_24360

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38860_PI390587928	Hv_44K_v2	AATACCTAGCTGATGTCGTAAGCTCATCGGCTAGTGGCAGCAAGAATGACAGTGTTCTTT	366	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.325	1.227	1.021	1.077	0.402	0.414
Raw	65.228	93.638	68.995	121.697	15.359	16.712

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376361	2586	2e-24	1995 - 2054	100	60 / 60	plus	None
MLOC	MLOC_16093.1	1616	2e-24	306 - 365	100	60 / 60	minus	None
JLOC1	JLOC1_11064.1	1749	8e-25	1384 - 1443	100	60 / 60	plus
Harvest21	ABC20577	685	3e-25	367 - 426	100	60 / 60	plus
Harvest35	U35_24360	685	3e-25	367 - 426	100	60 / 60	plus

Contig Sequence (685 bp)

>U35_24360 685 Hv_44K_v2
TTAGGAGGGCATTTGATGCGCAAGACCAAAGTGGAGGTGGAGGCTTTATTGCGGTGGAGG
GATTTCAACAAGTTCTCAGGGACACCGACATAACATTTCCTTCTGACAAGCTTGACGATC
TCTGCAATGCGGGCGTCATAGTATGGAGTGAGTTCTGGCAGGCACTGCTTCAGTTGGATA
AAAGGGCTGGAGGCATGAAAGATCCAACTGGCCTCATGGGCAAGAAGCAATTCACCATCT
ACCACTTCAATGGAATTGCCAAGTCTGTGCTTAATGGGAGTGGAAACACAGGAGGCTCAA
CTCCAATACAGAGACCTAGGATATGCAAGTTAAATGTCAGCGTCCCACCTAGGTGGACTC
AGGATGAATACCTAGCTGATGTCGTAAGCTCATCGGCTAGTGGCAGCAAGAATGACAGTG
TTCTTTCTCTTGCTCCACCAGTTCAGACTCCTTGTCAGCATGCGCCATTAGTGGACTGCA
TTAGAACTCGATGGCCACGAGCAGTTTGCAGCTGGGCTGGAGATGCGCCGAGTATTGTCT
GATGCGCTGAGTTGTTTGCCGCTCGATCCAGTCGTATCACTTGTTGGGGCTGATTTCGAA
GAGGGCCCGCGCTGAGCAGACTGCTTCAACTGCCATAGCGTTGACCATGCCATGCAAAGT
TTTGGAAGGGGATGCTGGTGTTGTA

Homology of Contig U35_24360 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g34440.1	622	1e-110	protein\|ubiquitin interaction motif-containing protein, putative, expressed
Brachypodium v1_2	Bradi5g09920.1	628	4e-112
Arabidopsis v10	AT1G43690.1	599	8e-71	ubiquitin interaction motif-containing protein \| chr1:16478519-16482589 FORWARD LENGTH=599