barSeed - Barley Seed Development Database

Probe CUST_38855_PI390587928

Source Contig U35_2433

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38855_PI390587928	Hv_44K_v2	TGCATTCCGTTCAAAAGTTGCTTGGTTATATCATCCTTGAATAAACATCGCTGGTTTTGC	629	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.249	3.072	1.210	0.722	0.451	0.402
Raw	169.129	207.306	67.069	64.537	13.944	13.553

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376112	2603	2e-24	2495 - 2554	100	60 / 60	plus	ABC05760 ABC13204
MLOC	MLOC_6010.1	377	2e-24	207 - 266	100	60 / 60	plus	ABC05760
JLOC1	JLOC1_3903.1	2818	8e-25	2669 - 2728	100	60 / 60	plus
Harvest21	ABC05760	710	3e-25	630 - 689	100	60 / 60	plus	ABC05760
Harvest35	U35_2433	710	3e-25	630 - 689	100	60 / 60	plus

Contig Sequence (710 bp)

>U35_2433 710 Hv_44K_v2
GAAAAGTGCAGAGCCACCAGAGGAGAAAGCTTGGGTCACTCAGCTTTGCACTTGTGACTT
GTTCAGCCATGGAGTTCAAGCACCTTTGCCTGGTCAGGTTCAAGGAGGGCGTGGTGGTGG
ACGACATCATTCAGCAGCTCACCAAGCTCGCCGCTGAGCTCGACACCGTCAAATTCTTTG
GGTGGGGAAAGGACGTGCTGAACCAGGAGACGCTGACGCAGGGCTTCACCCACGTCTTCT
CCATGAGCTTCGCGAGCGCCGAGGACCTGGCGGCGTGCATGGGCCACGAGAAGCACTCTG
CCTTCGCCGCCACCTTCATGGCCGTGCTCGACAAGGTCGTCGTCCTCGACTTCCCCTTCG
TCGTTGCCAAGCCGGCGCCATCCGCTTGAACCCAGTACCCCACCCTGGTATCTGTCTGTT
ACCAAGCAAGTAAGCATCTACGTACCATCACCAACCACTGTCTGAAAGGTGCCTACCATT
TCATGTAATAGCCACCATCCATCTATCTATCTGAAGGCTGCAGCTGTGAATGATGTACCT
AAGGCCTCCTATTTTTTGCTTGCTTGTCCTGCTACTGCAGCGTTAACCGGCCGTCTAGCC
TGTAAAGCCTCCCGTGTAACTCTATTCCGTGCATTCCGTTCAAAAGTTGCTTGGTTATAT
CATCCTTGAATAAACATCGCTGGTTTTGCTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2433 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g42625.1	112	2e-58
Arabidopsis v10	None