barSeed - Barley Seed Development Database

Probe CUST_38850_PI390587928

Source Contig U35_2438

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38850_PI390587928	Hv_44K_v2	GGTCTGCAAACAAATTCACTAGATTATTAATGACGTGCGTTACCGTGCTCGTCTGTCAAA	2147	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.691	2.667	3.922	1.456	0.265	0.179
Raw	62.543	389.226	475.305	275.123	17.748	13.076

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_38547.1	2241	5e-22	2178 - 2235	98	57 / 58	plus
Harvest35	U35_2438	2221	3e-25	2148 - 2207	100	60 / 60	plus

Contig Sequence (2221 bp)

>U35_2438 2221 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGAGCACAGCAGCCTTCAGTAGTCTCTTCCCATCCATTCTG
CCTTGAGGAAATTGTCTGAACCTTTCCTCCACTTACTAGTCTTTCTTCCTCCCCATTGCT
GCCATGAGGGCGCCTGTGGCGTTCTTTGCATGGTGCGCCCTCCTCTTGGCGTGTGGCGGC
CTGCTGCATTGCGCGGAGGCGGCCAAGGCCAGGCACCTCAAGTGGGAGGTGAGCCACATG
TTCTGGTCGCCGGACTGCGAGGAGAAGGTGCTCATCGGCATCAACGGCCAGTTCCCCGGC
CCCACCATCCGGGCCAAGGCCGGCGACACCATCGTCGTCGAGCTCAAGAACGGGCTGCAC
ACCGAGGGGGTGGTCATCCACTGGCACGGCGTCAGACAGATTGGAACACCGTGGGCGGAT
GGCACGGCGGCGATCTCCCAATGCGCCATCAACCCCGAGGAAACCTTCACTTACCGATTT
GTCGTCGACAAGCCGGGGACATATTTCTACCATGGGCACTACGGCATGCAGAGGGCGGCA
GGGCTGTACGGCTCTCTGATCGTGGATGTGGCAGATGGGGAGGAAGAGCCGTTCAAGTAT
GACGGCGAGCTGAACCTGCTCCTCAGCGACTGGTACCACGAGAGCATCTACAACCAGATG
GTTGGCCTCTCCTCCAGCCCCATGAGATGGATCGGCGAGCCCCAGTCGTTGCTGATCAAC
GGCAGGGGGCAGTTCAACTGCTCGCTCGCGGCGGCGCACACGCCGGGCACCAAGCAGTGC
ACCGCCGGCGGCAACAGGCATTGCGCGCCGGTGATCCTCCCCGTCGAGCCCAACAAGACC
TACAGGCTCAGGATCGCCAGCACCACGTCCCTGGCTTCCCTCAACCTCGCGATCGGGAAT
CACAAGCTGACGGTGGTGGAGGCCGACGGCAACTACGTGGAGCCGTTCGTGGTGGACGAC
ATGGACATCTACTCCGGCGACAGCTACTCCGTCCTGCTCACCACCGACCAGGACCCGTCG
TCCAACTACTGGGTGAGCATCGGCGTGCGCGGCCGGGCGCCCAAGACGGCGCCGGCGCTG
GCCCTGCTCAACTACCGGCCCAACCGCGGGTTCAAGCTGCCGGCCATCGCGCCGCCGGTG
ACCCCGGCGTGGAACGACACCGCGCACAGCAAGGCGTTCACGACCCAGATCAAAGCCCGC
GCCGGCACGCCGCCGCCGCCGGCGACGTCGGACCGGCGCATCGAGCTGCTCAACACGCAG
AACAAGCTGGACGGGCACATCAAGTGGTCCATCAACAACGTGTCCATGGTGCTCCCGGCG
ACGCCCTACCTGGGGTCCCTGAAGCTGGGGCTCAAGACGGCGCTGGCCGCCGCGCGGCCG
GCTGACACGTTCGGGCGCGCCTACGACGTGACGCGGCCGCCGCACAACCCAAACACGACG
ACGGGGGACAACGTGTACGTGCTCCGCCACAACACCACGGTGGACGTGGTGCTCCAGAAC
GCCAACGCGCTGCAGCACAACGTGAGCGAGGTGCACCCGTGGCACCTGCACGGGCACGAC
TTCTGGGTGCTGGGGTACGGCGAGGGGGCGTACAGGGGCGACGCCGCCGACGCGGCGAGG
CTGAACCTGGTGAACCCGCCGCTGCGGAACACGGCGGTGATCTTCCCGTACGGGTGGACG
GCGCTGCGGTTCGTGGCGGACAACCCCGGGGTGTGGGCGTTCCACTGCCACATCGAGCCG
CACCTCCACATGGGCATGGGGGTCATCTTCGCCGAGGCCATCGAACGCGTCGGGAAGGTG
CCCAAGGAGGCCGTCTCCTGCGGCGCCACGGCCACCGCGCTCATGAACGGCGATCACCTC
TGATCGTGAATCAGCCGTTGAGCCCTTTATGAGAGCCTGGCTTGGGCCTCTCTATCTTGT
GCAATTGAAGCGTTTGGTTACTCATGATTAGCTAGGGTTCTTCCATTTCTCCCTTCTCTA
AAGGGCTCCATTTTCCCTTTTTTGATGTATCATTAGGGAGTGAGATTGTATTTGTTAAGT
GCTTATGATTTGTTGGAATCATGGATTGGAACGCAAACAACGGTTTGCTCGGCATTAATG
TGCACTTCAAGGTTCAATCTTAGAATTCAAAAAAAAAAAAAAAATGCGGTCTGCAAACAA
ATTCACTAGATTATTAATGACGTGCGTTACCGTGCTCGTCTGTCAAAAAAAAAAAAAAAA
A

Homology of Contig U35_2438 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g37080.1	582	protein\|L-ascorbate oxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g37620.1	581
Arabidopsis v10	AT5G21105.1	588	Plant L-ascorbate oxidase \| chr5:7172727-7177409 FORWARD LENGTH=588