barSeed - Barley Seed Development Database

Probe CUST_38849_PI390587928

Source Contig U35_2439

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38849_PI390587928	Hv_44K_v2	AGCATTATGCTTTTCCTACGATGGTGTGCATCTCCCATTTCTCTCCTATATATCTATATA	1762	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.126	1.453	1.163	0.925	0.271	0.270
Raw	1151.894	2342.105	1632.600	2098.624	210.452	229.989

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_52001.1	1834	8e-25	1758 - 1817	100	60 / 60	plus
Harvest21	ABC09314	841	3e-25	44 - 103	100	60 / 60	minus	ABC09314
Harvest35	U35_2439	1865	3e-25	1763 - 1822	100	60 / 60	plus

Contig Sequence (1865 bp)

>U35_2439 1865 Hv_44K_v2
CTGCAGGAATGCGGCACGAGGCTGAGTGCTGGCTTCACTCTCTCGTCGGGAGGGTTAAGC
TGGTGACGGATTCTCCCCTACCTATCGACCCACGCCGCCGCCACGCCCGCCGACGACGAC
GATGGCAACTACCGCCTCGCCGTCCACCACGACCACCCCCCGGTCCTTCCTCTCGTCGCC
TTCCTTCTCCCTCAGGGCATCGAAGTCGAGCCACCTCCGGACGACGAGAAGGCTGCCCGT
TAATGTACGCTGCGCCAGCAGCTCTCCTGCCGCCGATGCATCTTACACGACGAAGGTTTC
GAGGAATGCCAACATAGCCAAGCTCCAAGCAGGCTATTTGTTTCCCGAGATTGCCAGAAG
AAGGGCGGCTCATCTGCTGAAGCATCCTGACGCCAAAATTATTAGTCTGGGAATAGGTGA
CACTACTGAGCCCATTCCGGAGGTCATAACAAATGCCATGGCAGAGAGGGCACACGCTTT
ATCCACAGTCGATGGCTACAGTGGTTATGGAGCCGAACAGGGTGAAAAGAAACTAAGGGC
AGCAATTGCTGCAACCTACTATGCGGATCTTGGTATCGACGAAACCGATATATTTGTCTC
TGATGGCGCCAAATGTGACATTTCTCGTCTACAGGTTCTTTTTGGATCTAAAGTGAAGAT
TGCAGTTCAAGACCCATCATATCCTGCATATGTTGATTCAAGTGTTATCATGGGGCAAAC
TGACTTATATCAGCAGGATGTTCAGAAGTATGGCAATATTGAATACATGAGATGCAGTCC
TGAAAATGGATTTTTTCCTGATCTTTCCAGTGTCCCACGGACAGATATCATATTCTTCTG
TTCACCCAACAATCCTACTGGTGCTGCTGCATCCAGGGACCAGCTAACACAGCTAGTCAA
ATTTGCAAAGGACAATGGGTCCATAATAGTCTATGATTCTGCTTATGCCATGTACATATC
AGATGACAGCCCAAAGTCCATCTTTGAAATTCCTGGGGCAAAGGAGGTTGCCCTCGAGAC
AGCATCTTTCTCTAAATATGCTGGGTTCACCGGTGTCCGACTGGGATGGACTGTGGTCCC
CAAGGAGCTCCTTTTCGCTGATGGGCATCCAGTTGCTAAAGATTTCAACCGCATAGTCTG
CACTTCCTTCAATGGCGCATCGACAATCTCTCAGGCCGGTGGTTTAGGCTGCCTCTCTGC
AGAGGGTCTAAAGGCTATGCAAGAGGTTGTTGGATTCTACAAGGAGAACACTAAAATCAT
CGTTGACACGTTTACGTCGCTTGGATTCAACGTCTATGGTGCCAAGAATGCCCCCTATGT
GTGGGTGCACTTCCCTGGCCGCAATTCTTGGGATGTCTTTGCTGAGATCCTTGAGAAGGC
GCATGTGGTTACTACTCCTGGCAGTGGGTTTGGGCCTGGCGGTGAGGGCTTTGTGAGGGT
CAGTGCATTTGGCCACAGAGAGAACATTATTGAAGCTGCAAGAAGACTGAAGCAGCTATA
CAAGTGAGGGTTGGCTTAGCAGATGGCCTCCTCTGTCTGTTGCTGGGGAGGGAGCCAGCC
AATAAGAACCCAGCAGCATTTGGAACACCAGATTTGCTCCTGGGCTTCTGGGAACTGGGA
AGTGTTAGAACAGAGACAGGGTATTGTTTTTGCTCCTCTAGATGTTACTCTTTTCATAAC
CATTTAATACTGGAAATTTGCTTGTTCAATTGTGCTGTGGAGCCTGTATCATGATGTATT
TGTCTCGCATCTGCTCGTCTTCAGCATTATGCTTTTCCTACGATGGTGTGCATCTCCCAT
TTCTCTCCTATATATCTATATATCTATTAAAAAGAACCATCATAAGCCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_2439 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g18810.1	465	protein\|aminotransferase, classes I and II, domain containing protein, expressed
Brachypodium v1_2	Bradi1g21440.1	459
Arabidopsis v10	AT4G33680.1	461	\| Symbols: AGD2 \| Pyridoxal phosphate (PLP)-dependent transferases superfamily protein \| chr4:16171847-16174630 REVERSE LENGTH=461