barSeed - Barley Seed Development Database

Probe CUST_38848_PI390587928

Source Contig U35_2440

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38848_PI390587928	Hv_44K_v2	AGTTTAGGATTGTGATTTTTGAGACAAGTTGCCTAGTGGACAAGTTGTAAACTCGAAGCT	1813	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67204.1	3171	2e-24	366 - 425	100	60 / 60	minus	ABC03847
JLOC1	JLOC1_44343.1	2389	8e-25	1919 - 1978	100	60 / 60	plus
Harvest21	ABC03847	1873	3e-25	1814 - 1873	100	60 / 60	plus	ABC03847
Harvest35	U35_2440	1873	3e-25	1814 - 1873	100	60 / 60	plus

Contig Sequence (1873 bp)

>U35_2440 1873 Hv_44K_v2
GGGCCAGGTGGCGGCCTAGCGGTCCGTGCTCGCCCGAGTCGCAGCAGCAGCAGGAGAACT
CATCGTCGTCGTCTCGCGGGTGGCGGCGGGGATGTACGTGCCGCAGTCGTCCCGCGGCGG
GGGCGGCTCCGCCGGGGAGCAGCCTAGGGTTTACCAAGTCTGGCGGGGAAGCAACGAGTT
TCTCTTGCAAGGGCGGTTCATATTTGGACCTGATGTGAGATCCTTGTTTCTCACTATATT
CCTCATCCTTGCACCAGTGTTGGTCTTCTGTATATTTGTTGCCAGACATCTGATGAATGA
TTTTCCTGATCACTGGGGGATTTCAGTTATGGTTGTAGTGGTTGTCTTCACAGTATATGA
TTTGACGCTGCTGCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCTCGTAACACCCA
CCCCCCCGAACCTGAAGCCCATGATGTGAACAATGATACTGGAAATGGTCAGACTCCACA
ACAATTGCGCTTACCACGGACAAAGGATGTTTATGTAAATGGAGTCGTCGTAAAGGTCAA
GTACTGCGACACCTGCATGCTGTATCGGCCACCTCGTTGCTCTCACTGTTCTATCTGTAA
CAACTGTGTGGAGCGTTTTGATCATCACTGTCCTTGGGTTGGTCAATGCATAGGACTGCG
TAATTATCGTTTCTTCTATATGTTTGTCTTCTCGACCACATTACTCTGCCTCTACGTATT
TGGGTTCTGCTGGGTGTACATAATTAAGATCAGAGACGCAGAAGATTCATCGATTTGGAG
GGCAATGTTGAAGACACCTGCGTCAATGGTTCTGATCATCTACTGTTTTATTTGTGTGTG
GTTTGTTGGTGGTCTTTCTGTCTTCCATTTCTACCTGATGAGCACCAACCAGACTACCTA
CGAGAACTTCAGGTATCGGTACGATCGGCGGGCTAACCCATACAACGTAGGTGTGGTGAA
TAACTTTCTGGAGATCTTCTGCACTGCCGTTCCCGCTTCCAAGAACAATTTCCGAGCAAG
GGTCCCAGTAGAGCAAAGTTTACAGCAATCACGCCCGCCAACCAGGGGTTTCATGAGCCC
AAACATGGGCAAACCTGTTGGAGATCTTGAATTGGGCAGGAAGCCAGTATCATGGGACGA
ACCTCGTTCAGGAGCTGATATAAGAGATTTAGAAGTTGGGGGCATGTTGGATGAGAAAGA
GGGCAGAATAACCCATGCGTCACCAGATCTGAGCAGAGAAGCCCTTCCAGTTGAGCTCAT
GGAAGGCAGGGCTGGTATGCATTCGAGACGATCAAGCTGGGGTCACAGAAGTGGGACCTC
AGAGTCAATGGACAGCATCGCTGTGCAGATGGGAGGTGGTGAAACTAACTGGGGCTCGGT
CAGCAGTGGCCACGGCACAACTAGTGGAGCTCACTAGCAAACGGCACACTGCTTTCTGAC
GCCGCACTGGGTCTGATCTCAACAACGAACAACCCTGTCTGATCTCCAAAATGAAGAACC
GGCCTTTCCGAGTACCCTGTGAGCTCTTGTGCCATTCACCTAGGGTATATATGCCAATGC
TTTCTTACCTGTGTCCGTTTCATCTTTGGAAGGGCGTCAGTCCTTTTGGTGTGCTTCTCG
TTCGTTTGGTGTTTTAAGTAAGCAAAGAAAATAACAGAAGAGATTTAACTCATGCGTGGC
TTGGATTGTCTTATCTGTGTGTATATATTTATTATTGGAACAGTCTGTAAGAAAGTGTGC
TCTGTATGGTTTGCTGCTTGTAATATTCTTAGCTCTGAAATCATGTTCTATAAGTGTAGT
TGTGAAATCATCCAGTTTAGGATTGTGATTTTTGAGACAAGTTGCCTAGTGGACAAGTTG
TAAACTCGAAGCT

Homology of Contig U35_2440 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g33450.1	442	0.0	protein\|zinc finger DHHC domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi4g34790.1	443	0.0
Arabidopsis v10	AT3G26935.1	443	1e-160	DHHC-type zinc finger family protein \| chr3:9933001-9935218 REVERSE LENGTH=443