barSeed - Barley Seed Development Database

Probe CUST_38841_PI390587928

Source Contig U35_2447

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38841_PI390587928	Hv_44K_v2	CGACGAAGGCATACATAGATGAATATGAAAACCTCTCTAGGCTACACAAAAAAGACGGAG	2187	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64743.1	2580	2e-24	2212 - 2271	100	60 / 60	plus	ABC06092 ABC08599 ABC40998
JLOC1	JLOC1_42542.1	2782	8e-25	2274 - 2333	100	60 / 60	plus
Harvest21	ABC06092	2446	3e-25	2188 - 2247	100	60 / 60	plus	ABC06092
Harvest35	U35_2447	2447	3e-25	2188 - 2247	100	60 / 60	plus

Contig Sequence (2447 bp)

>U35_2447 2447 Hv_44K_v2
GAAATCTACCTCCCTCCTCCCCTCCCCTCCCCTCCGGCATCCACCCGCTCTCCGGCGCGC
CGCCAGATCGGGCCAGAAGAGGAGGGCGGGCACCTACCTTACCCCTCTCCTCCCCGGCGG
CAGCCTGCGCTCGGTCGCCGCGGCGTGTGCGTTTGGCGGTTCGGGAGTCGGGCGGTCCGG
CGCCGCGCGCGGGAGGGCAGGGGTCCGTCCGGTCTCCGGAACCGTCTTGGAGGGCAGATC
GGCCCGTCCGGCAACCGGTAATGCAGCGGAGCAAGAGTTCGGCGGAGGTGGACTTCTTCA
CGGAGTATGGCGACGCCAACCGGTACAAGATCCAGGAGGTCATTGGCAAGGGGAGCTATG
GGGTCGTCTGCTCTGCCCTTGATCTGCAGACCAGGCAGAAAGTGGCGATCAAGAAGATAC
ACAATATTTTCGAGCATACCTCCGACGCCGCACGGATTCTCCGTGAGATCAAGCTTCTGA
GGCTCTTACGGCATCCCGACGTCGTGGAGATCAAGCACATTATGTTGCCTCCCTCGAGGA
AGGACTTCAAAGACATCTATGTTGTTTTTGAGCTCATGGAGTCTGATCTCCACCAAGTTA
TCAAGGCCAATGATGACTTGACAAAAGAGCATTACCAGTTCTTTCTCTACCAACTACTCC
GAGCCCTCAAATACATTCATACTGCTAGTGTTTACCATCGTGACCTGAAGCCCAAGAATA
TTTTAGCAAATTCTAACTGCAAACTGAAGATATGTGATTTTGGACTAGCACGAGTTGCAT
TCAATGATACCCCAACAACTGTCTTCTGGACGGATTACGTCGCGACAAGATGGTATAGAG
CTCCAGAACTCTGTGGTTCCTTTTTCACAAAGTATACACCTGCCATTGATATTTGGAGCA
TTGGGTGCATTTTTGCTGAGGTGCTGACAGGAAAGCCTTTGTTTCCTGGTAAAAATGTTG
TCCATCAGTTAGACTTGATGACTGATCTTCTAGGCACACCTTCTATGGATACAATTTCTC
GGGTCCGAAATGAGAAAGCAAGAAGGTACTTGACCAGTATGAGAAAGAAAGACCCGGTCC
CATTTTCTCAGAAGTTTCCTAACGCAGATCCATTGGGAGTAAAACTCTTGGAGAAGCTAT
TAGCCTTTGATCCAAAGGACCGTCCAACTGCGGAAGAGGCATTGACTGATCCATACTTTA
GAGGCCTTTCCAAGCCAGAGAGAGAACCATCCTGTCAGCCAATTAGAAAAATGGAGTTTG
ACTTTGAGCACAGCAGGGTGTCAAAGGATGATATAAGGGAGCTGATATTCCAGGAGATAT
TGGAATATCATCCGCAATTGCTGAAGAGCTACATAGATGGCACAGAGAGGACCACCTTCC
TCTACCCAAGTGCTGTTGATCATTTTAAGAAGCAGTTCTCTCATCTCGAAGAAAGTGATG
GCAGCGGCCCTGTAGTCCCAGCAGATAGAAAACATGCATCTCTTCCTAGGTCAACTATTG
TTCACTCGACTCCAATTCCTGCGAAGGACACTCGGCCACTCTTTGGCAAGCCTTGCAGCA
AAACTTCCTCAGAGACAGGGAGGTATGCTGGGAACGGTCACGGTGCTTCTCAGGCTTCAC
ACGCGGCACAAGCAGTGGTTTCACGGAGAGCTGCTGGTTCAGCGTTACCTTACGAAGGTG
GAAGCGGTAAACACCCTTACGACGTGGCAAGCAGGCCGGCGATGAGCACAGGATGCCCTC
CTCAGCAGCAGATCCCACAAATGTATGGGCAATATCAGCATCAAGCGCCTGCTGGCGCTG
GTGCTGGTGCTGGTGCTGGGATACCACAGGCCATGGGGGGCTATGCTTGTGGGGGTTACG
CCAAAGGCACGGCGCCTGCTCCGGCCATGAGAGCACCCACCTACCGACATGTTCCGGCGG
GGCAGAAGAACGGTCGTCTGGACAGACTGGCGGTGGAGACCACCGACATATACACACGGT
CGCTCAACGGCATCGTCGCCGCTGCCGCGGCATCGGCAGGCACCGCCAGCGCCCACAGGA
AGGTCGGCACCGTCCCGTTTGGCATGCCGACGACTTACTAGCGGCTATGAAGACGGCAGC
GCCGCGTCTCCAGACTCGTTGATCGGAACGGTAGCAACCGGAGGCATTGGCCTGAAATAA
GTTGGCGGATGAGGATCGTCTGGACGACGACGAAGGCATACATAGATGAATATGAAAACC
TCTCTAGGCTACACAAAAAAGACGGAGGGTTTGGCCAGATGAGCTGTTTATTTAGGTGGG
AATGAAAATTAATTAGCTGGTTAGCGGCTGGAGGCAGGTCAACTCAACACAGAAATGAAG
TCTGTAATGTGCTACTGTACTATCCAACAGGCTAATTAATCAATTAATTAAAGGGATGAT
GGTCCATTGATCATCATCATATGATTCAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_2447 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g43910.1	612	protein\|CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
Brachypodium v1_2	Bradi2g15317.1	598
Arabidopsis v10	AT2G42880.1	606	\| Symbols: ATMPK20, MPK20 \| MAP kinase 20 \| chr2:17840572-17843947 REVERSE LENGTH=606