barSeed - Barley Seed Development Database

Probe CUST_38838_PI390587928

Source Contig U35_2451

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38838_PI390587928	Hv_44K_v2	GACTGTATACGTGAGATGCGTCGGTCCGTTCTGAAATTCAGTTACTTGTGCGCCAAAAAA	1014	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.552	1.263	1.050	1.012	0.431	0.540
Raw	6954.503	8959.883	6500.527	10259.863	1480.234	2013.767

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_26486.1	1432	2e-21	1168 - 1221	100	54 / 54	plus
Harvest35	U35_2451	1205	3e-25	1015 - 1074	100	60 / 60	plus

Contig Sequence (1205 bp)

>U35_2451 1205 Hv_44K_v2
GCAAGGTTTTCGCCTAAAAGCCCAGCCGCCCAAGCGACGGCCATAGCCAAAAACCCTAGG
CCGCCGCCACACCGCCCTCACGCCATCCGCGCCGGCGCCGCCTCCCCCCACCGATCCTGG
CGAAAGACCTCGCGCGGGGGCACCGGAGGCGGAGAAGGGATGGCGTCCGACGGGGACAAC
AAGCGGCTGTTCCGCGTGCGGCGCACGGTGTTGCAGATGCTGCGAGACCGCGGGTACCTG
GTGAAGGACGACGAAATCAAGCTGTCCCTGTACGAGTTCGTCCAGCGGTACGGTGACTCC
GTCCGCCGCGACGAGATCGTCATCCATTGCGAGAAGGACGGCGACCCGAACGACAAGGTC
GACGTCTTCTTCCTCGACGAGTCCAAGACCGGCTTGGGCGTAGTCAGGAGCTGCGTCGAC
AAGATGAAGCAGCAGAACGTCACCAATGGCATACTCATCTTGCAGAAGGCGCTGAGCGGC
CCCGCCAGGACCGAGGTCTCACAGAGCAAGAAGTACCGCCTCGAGGTCTTCCAGGAAGGG
GAGCTTCTTGTGAACATTACGGAACACCATCTCGTTCCCAAGCACGAGCTCCTGAATGAC
GAGGAGAAGAAGGAGCTGCTGCAGAAATACACTGCCCACGAAACTCAGCTCCCCAGGATT
CAGCTCACGGATCCGGTGGCAAGATACTACGGCATGAAGCGTGGGCAGGTGGTGAAGATC
ACCCGGAAGAGCGAAGTCGCCGGAGAATATGAGACCTACCGCTACGTCATCTGAGCCTCA
CAACATTCCCAAGGCTTGAGAGGTTGTTCTGGGAGTTCAAATGGTTCCTCCTTTGCTAAT
TCCTCTCAGTTTGAAGCATCACTGTCTATCGGGGAACCAAGATGCTCGCTGAAGCAGCTT
GGTGCCCCTTTGTTTGTAACTTGTCTGGCAATTCGACATGAGGGTGTTAGCTAGAAATAG
GTTTCTCTGTAGATGTGCTGTGCTCCGTGCTGCTAAACTGCTAAGTAAACTCTTGACTGT
ATACGTGAGATGCGTCGGTCCGTTCTGAAATTCAGTTACTTGTGCGCCAAAAAAAAAAAA
AAAAATGGAATGAGTGTGCCTTTCTGGGACTCTAGAAAGGATGTAACGTGCGTCCGTCTG
GACTCTGGACTAGTATCTCTTACGACCGGCAGCGAAGTGGCCGGCCTCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_2451 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g41040.1	206	2e-66	protein\|DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed
Brachypodium v1_2	Bradi5g13967.1	206	3e-75
Arabidopsis v10	AT3G22320.1	205	7e-60	\| Symbols: ATRPABC24.3, RPB5A, NRPB5, NRPD5 \| Eukaryotic rpb5 RNA polymerase subunit family protein \| chr3:7891045-7892094 REVERSE LENGTH=205