barSeed - Barley Seed Development Database

Probe CUST_38837_PI390587928

Source Contig U35_2452

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38837_PI390587928	Hv_44K_v2	TTCGCCTCCAGCCGGTGAATTATTCTTGTGGACAAAAATAAAATGTTTTCTTTAGATTGA	1422	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.635	1.506	1.215	0.648	0.299	0.280
Raw	480.586	646.003	486.525	400.183	65.260	68.428

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC06895	1453	3e-25	1368 - 1427	100	60 / 60	plus	ABC06895
Harvest35	U35_2452	1508	3e-25	1423 - 1482	100	60 / 60	plus

Contig Sequence (1508 bp)

>U35_2452 1508 Hv_44K_v2
AGTCTTCCTTGTGCCGCCAACAACGCCTCCTCCCCAAATACCCCCAATTTGTTGCCAAAC
AACATATCGATCTTGCTGCGTGGTTGAGTGCCGATACTCTCCTTTCCAGAAATTTCCGGG
TTCAGTTGATTCCCATCCCCCCTCCTCAGGAAGCCCGCCCACCATGGGTAGCCGGTTTGT
GAATCTGTTGGCTAGGAGCTACGGCGGCCCCAGCTACTTCAGCCTTCACTGTATGAATCC
GGAAAACTTATTTCGCCCAACCCGGTCAGCGGTTCGAGCAGTTCAACCGTTAGCGGACGC
TCCGCTGCCTCCCCCATCTCTGTCATTCGGCTGGCCATCCAACAATGGGGAACTGGCGTG
GATGAATTTCATGGCTTTCGGCCTCAACCGGGACAATCTTCTCGCCGTGGACCAAATCGG
TAGGACCATCTTGTACAACCATGACTCTCGTTTGCTCCGCACAGGAATGCCCAAGATGTG
CAGGCCCATTATCGACCCCATCTCCATTGCCGTGGGCGACAGCCTATACGTCATGAGCCG
CAACCCTGGCCCGCGGCCGGATCAGCACTGCTTCCAGGCTCTCATCGACAGCCGCCCGCT
TTCTAGTGCTAGCAACACCAAAAACTGGTGCTGGTATTCCCTCCAGCCACCGCCTCTCTT
TGCCGATGGGGTGGAAGTGGAATCCAGCGGCTGCGACGTCTTAATGCCCTTTAAAATCAG
CGCCTACACTGTGGTTGGCGATTCACAGATCTGGATATCTACATTTGCCGCTGGCACATA
CTTGTATGACACCGTGAGTGACGCATGGAGCAAAGTAGGCAACTGGGCATTGCCCTTCAG
AGGTCGTGCTGAGTACATCCCTGAGCACAACCTCTGGTTTGGCTTCACACCCAACGATTT
GCAGCTCTGCACAGCAGACCTCACTACCTCATGTGAATTGTGGCCGCCCATGCTGCAGAA
TGTGTGGACAGATGTGAACAGGCCAGAAGATTGGAGACTGAGAGATGCCAGCATTGTGCC
GCTAGGATCCGGTAAAGTCTGCATTGCCAGGTTCTTTCTTACTAGGCCAGAGGAGAGCAT
TGAGGATATGCCTGGCCATGCCCTTGAGGAAAGAAAGAATCTTGCTGTTCTTGAGGGCGT
CAAAGTGTTAAAGCATGGGCAGGCTCGGCTCCGGATGGTTAAGCACAAGTCGGAGCGTTA
TGTCTTTGGCCGTGACCTTGCCATACCGCTGTGATAATTTGTACTTCCATCTATGGCAAG
TGAGTTCTCTTAGATCAAAGACCAGTGGCTCGCCTGTATATTGTCCTGCTTTCTATCTGT
CAGTTGTTGTTTCCGTACCCTACAGTTGTTGGTGCTTGTGCTTTTGTTATGCAGTTTGTC
GACTTGTTTTTACTGGCTCCAACTACGCTTGTGCCCTTACCCTTCGCCTCCAGCCGGTGA
ATTATTCTTGTGGACAAAAATAAAATGTTTTCTTTAGATTGATTGTTTTGTTTTTTTTTA
GATTTCTC

Homology of Contig U35_2452 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None