barSeed - Barley Seed Development Database

Probe CUST_38836_PI390587928

Source Contig U35_2453

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38836_PI390587928	Hv_44K_v2	TTCACAGATCTGGATATCTACATTTGCCGCTGGCACATACTTGTATGACACCGTGAGTGA	712	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.778	0.904	1.912	2.267	0.915	0.796
Raw	212.709	378.522	714.027	1368.936	192.734	182.638

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249692.1	1491	2e-24	834 - 893	100	60 / 60	plus	ABC06895 ABC06896 ABC47659
MLOC	AK358463	1641	2e-24	745 - 804	100	60 / 60	plus	ABC06895 ABC06896 ABC47659
MLOC	MLOC_46889.1	603	2e-24	290 - 349	100	60 / 60	minus	ABC06895 ABC06896
JLOC1	JLOC1_30303.1	603	8e-25	290 - 349	100	60 / 60	minus
Harvest21	ABC06896	1375	3e-25	710 - 769	100	60 / 60	plus	ABC06896
Harvest21	ABC06895	1453	3e-25	687 - 746	100	60 / 60	plus	ABC06895
Harvest35	U35_2453	899	3e-25	713 - 772	100	60 / 60	plus
Harvest35	U35_2452	1508	3e-25	742 - 801	100	60 / 60	plus

Contig Sequence (899 bp)

>U35_2453 899 Hv_44K_v2
CTCCCCAAATACCCCCAACTTGTTGCCAAACAACATACCGATCTTGCTGCGTGGTTGAGT
GCCGATAATCTCCTTTCCAGAAATTTCCGGGTTCAGTTGATTCCCATCCCCCCTCCTCAG
GAAGCCCGCCCACCATGGGTAGCCGGTTTGTGAATCTGTTGGTTAGGAGCTACGGCGGCC
CCAGATACTTCAGCCTTCACTGTATGAATCCGGAAAACTTATTTCGCCCAACCCGGTCAG
CGGTTCGAGCAGTTCAACCGTTAGCGGACGCTCCGCTGCCTCCCCCATCTCTGTCATTCG
ACTGGCCATCCAACAATAGGGAACCGGCGTGGATGAATTTCATGGCTTTCGGCCTCAACC
GGGACAATCTTCTCGCCGTGGACCAAATCGGTAGGACCTTCTTGTACAACCATGACTCTC
GTTTGCTCTGCACAGGAATGCCCAAGATGTGCAGGCCCATTATGGACCCCATCTCCATTG
CCGTGGGCGACAGCCTATACGTCATGAGCCGCAACCCTGGCTCGCGGCCGGATCAGCACT
ACTTCCAGGCTCTCATCGGCAGCCGCCCGCCTGCTAGTGCTAGCAACACCAAAGACTGGC
GCTGGTATTCCCTCCAGCCACCGCCTCTCTTTGCCGATGGGGTGGAAGTGGAATCCAGCG
GCTGGGACGTCTTAATGCCCTTTAAAATCAGCGCCTACACTGTGGTTGGCGATTCACAGA
TCTGGATATCTACATTTGCCGCTGGCACATACTTGTATGACACCGTGAGTGACGCATGGA
GCAAAGTAGGCAACTGGGCACTGCCCTTCAGAGGTCGTGCTGAGTACATCCCTGAGCACA
ACCTCTGGTTTGGCTTCACACCCAACGATTTGCAGCTCTGCACAGCAGACCTCACTACC

Homology of Contig U35_2453 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None