barSeed - Barley Seed Development Database

Probe CUST_38830_PI390587928

Source Contig U35_2459

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38830_PI390587928	Hv_44K_v2	TGTTGAAGATCTATCTAAGGAGGCTCAGGTTGAAAGAGAGCTCATGCTTATAAAACTCAA	437	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.328	0.305	0.905	1.299	1.174	1.418
Raw	158.163	201.445	606.216	1190.308	431.886	564.484

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361032	1751	2e-24	464 - 523	100	60 / 60	plus	ABC06684
MLOC	MLOC_47113.1	1058	6e-24	944 - 1002	100	59 / 59	plus	ABC06684
JLOC1	JLOC1_30421.1	1481	3e-24	1366 - 1424	100	59 / 59	plus
Harvest21	ABC06684	1858	3e-25	406 - 465	100	60 / 60	plus	ABC06684
Harvest35	U35_2459	497	3e-25	438 - 497	100	60 / 60	plus
Harvest35	U35_2458	1988	3e-25	439 - 498	100	60 / 60	plus

Contig Sequence (497 bp)

>U35_2459 497 Hv_44K_v2
AGCCACCAACCCCGCCCTCCAATATCCATGTCCGTCGCCACCGCCCACCACCTCCGGCCG
TCGCCATCGGCGGCCCCCGACCGTCTCACTCGATGCGCCGCGCGCGTCTCCTTCCGCCCC
TTGCGCCGCCGCGGAGTCGCCGCGGGGGCTAGCGCCGGCGGCGAGGCAACCGCCACCGTG
TCGACGGTCGCCGCGGGCGCCAAGAGGGATCCCCGGGATTGCAGGGTGCGGCGCCACACG
ATTTCTGTGTTCGTCGGGGACGAGAGCGGCATGATAAACAGGATTGCCGGGGTCTTCGCA
AGGAGAGGCTACAACATCGAGTCCCTCGCCGTGGGGCTCAACAAGGATAAGGCCCTCTTC
ACCATCGTCGTCTCGGGGACGGACAGGGTGCTCAAGCAAGTCATTGAGCAGCTCAATAAG
CTTGTCAACGTCTTGAATGTTGAAGATCTATCTAAGGAGGCTCAGGTTGAAAGAGAGCTC
ATGCTTATAAAACTCAA

Homology of Contig U35_2459 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g48370.1	513	3e-57
Arabidopsis v10	None