barSeed - Barley Seed Development Database

Probe CUST_3881_PI390587928

Source Contig U35_111

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3881_PI390587928	Hv_44K_v2	ATGTGTGGCGCTATGTGTTATATATGGATAAGAATAAAGGGAGTCATTTTCGGGGGTCTT	604	GeneList: midnightblue MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.010	0.010	0.508	1.499	2.169	2.811
Raw	95.498	497.373	33533.233	130538.333	74644.500	107949.866

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC00291	688	5e-23	605 - 663	98	59 / 60	plus
Harvest35	U35_111	784	3e-25	605 - 664	100	60 / 60	plus

Contig Sequence (784 bp)

>U35_111 784 Hv_44K_v2
GGATCCCCCGGGCTGCTTGAAGTCGGGGCAGTGCAAAAAAGAAACTACACCAACGAACTT
GGCCTCCATCCAAAAATATGGCGTCCAAGTCCAGCTGCGATCTCCTCTTGGCCGCCGTCC
TAGTCTCCATCTTTGCCGCCGTTGCCGCCGTCGGTAGCGAAGATTGCACCCCATGGACGG
CTACTCCGATCACTCCACTCCCAAGTTGCCGCGACTATGTGGAACAGCAAGCATGTCGCA
TCGAAATGCCCGGGCCGCCGTACCTCGCCAAGCAGCAGTGCTGCGGGGAGCTTGCAAACA
TCCCGCAGCAGTGCCGATGCCAAGCGTTGCGCTTCTTCATGGGGCGGAAGTCTCGTCCCG
ATCAGAGCGGCCTCATGGAACTCCCCGGGTGCCCTAGGGAGGTGCAGATGGACTTCGTCA
GGATACTCGTCACGCCGGGGTTCTGCAACTTGACGACCGTTCACAACACTCCATTCTGCC
TCGCCATGGACGAGTCGCAGTGGAACTAGGGATAATTCTGTCTCCCGCTCATGAATAAAT
AAGCATGTTGCGACCATACATGTGTGACATGCATGTATACATATATGAGCTCCTCGCGCT
CATCATGTGTGGCGCTATGTGTTATATATGGATAAGAATAAAGGGAGTCATTTTCGGGGG
TCTTAAAAAAAAAAAAAAAAAAAACTTCAATTCATGTGTTTTGTGGTCTAAATTATTAGA
AAAGTCGAGAAGCATCCAACAGTTAATAAAATTTCTACATTTTTTGTAAAAAAAAAAAAA
AAAA

Homology of Contig U35_111 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None