barSeed - Barley Seed Development Database

Probe CUST_38814_PI390587928

Source Contig U35_2475

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38814_PI390587928	Hv_44K_v2	GAGATATCGTCTTCAGTAAATCTACCTGAACAGATCGCCATATTCGGGCAGAAGATCAGC	915	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.899	1.683	1.815	2.088	0.733	0.758
Raw	34.415	102.621	94.870	174.681	21.644	24.071

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72839.1	3056	2e-24	546 - 605	100	60 / 60	plus	ABC06595
MLOC	MLOC_72838.1	1360	2e-24	897 - 956	100	60 / 60	plus	ABC06595
JLOC1	JLOC1_48474.1	2087	8e-25	1832 - 1891	100	60 / 60	minus
JLOC1	JLOC1_48473.1	2143	8e-25	937 - 996	100	60 / 60	plus
Harvest21	ABC06596	989	3e-25	829 - 888	100	60 / 60	plus
Harvest21	ABC06595	959	3e-25	495 - 554	100	60 / 60	minus	ABC06595
Harvest35	U35_2475	1470	3e-25	916 - 975	100	60 / 60	plus

Contig Sequence (1470 bp)

>U35_2475 1470 Hv_44K_v2
CCCCTCACCTCCCCGCCCGCCCACACAAGTGACCAGAGGCCAACACAAGAGGAGTGGAAT
CATTCATTCATTCATTCATCCATGGCTCCCCTCTTCGCCTCCTCCCACGCCTCCCACGCG
TCGCTCCTACTCCTCTCCCCCAACCCCGCCGCCGCCGCGCGTCTCCGCGTAGGTGGCCTC
CGAGTCAGGCGGCCCCGCCGCCTCCGCCTCCCCGTACGCACAGCCGCGGGAGGCAGCCCA
CTCGACGCCGAGATCCCCGACCCCACAGTCGACGACGACGAGTGGGGCCGCGAGCCGCCC
GCTTCCGCGTCGGGTAACTCGCGCCCCGGCGTCACCGACGAGTGGGGCGAGCCGGGGGTG
CCCGAGCCCGAGCAGCCCTCCGGCGCTGACACCCCTACCAACGACGACGAGTGGGGCGGG
GAGCCCACGCCGACGCCGCCCAAGGCGAAGGAGTCTCCTCTCTTTTTTGCCGATAAGGCG
GAGGAGGATCCGGTTACGAAGGAGGACGAGGGAAGGGAGGAGCTGAAGCGGTGCTTGGTA
GACACGGTGTACGGCTCCGGCCTGGGCCTCAAGGCGTCCTCGGAGGTCAGGGGGGAGGTC
GTGGAGCTCGTGGCCCAGCTCGAGGCAGCCAACCCTACGTCCGCGCCCGTCCAGGCGTCA
GAGCTCGACGGAAACTGGATCCTCTTGTATACGGCATATTCTGAGCTTCTACCGATTCTG
CTTGCCGGGGCAACACCATTCGCCAGAGTTGATAAGATATCCCAAGAAATCGACTCGAGA
AGCATGACGATAATTAATGCTTCAACTATTTCGACTCCATTTGCTTCGTTTTCATTCAGT
GCAACTGCTTCTTTTGAAGTACAAACTCCATCAAGGATAGAGGTACAATTCAAAGAGGGG
AGCTTTCAGCCTCCAGAGATATCGTCTTCAGTAAATCTACCTGAACAGATCGCCATATTC
GGGCAGAAGATCAGCCTGGGGCCTGTTAAGCAGCTGCTGGAGCCTTTGCAGCGAGCATTT
GCTAGCATTGCAGGGTCCATCTCTGGGCAGCCACCTTTAAAGGTACCGATTCCCGGTGAC
AACAAGGCCAAGTCGTGGCTTTTGACAACCTACCTCGACAAAGACTTGAGGATATCAAAA
GGTGATGGGGGTGGCGTGTTTATTCTTGCCAAAGAGGGGAGCCCTTTACTAGATTAACTG
TACATGTGTAATAGGTGTCATTATTCATATGTGCAAGGTTGAAAACCACGCTACAAGCAT
TCTTCTCCCCCTTTGATACACAATTTTCTGGTGGTTTTCTAGAGTCTGACAGAATCAACT
AAATGTTGTCAGTATGGAGTCTCCATACGCTTTCTGCTCTTTGGTAACTATAAGTGACAT
TTTGTGTTATTAAAAAAAAAAAAAAGCACGTTACGTTGTTAAAAAAAAAAAAAAAAANCC
CCNNNAAAAAAAAAAAANNAAAAAAAAAAA

Homology of Contig U35_2475 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g42500.1	375	2e-142	protein\|PAP fibrillin family domain containing protein, expressed
Brachypodium v1_2	Bradi3g34400.1	352	3e-162
Arabidopsis v10	AT2G35490.1	376	7e-92	Plastid-lipid associated protein PAP / fibrillin family protein \| chr2:14912309-14913797 REVERSE LENGTH=376