barSeed - Barley Seed Development Database

Probe CUST_38804_PI390587928

Source Contig U35_2490

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38804_PI390587928	Hv_44K_v2	TCAGAGTTTGCTGTAAGGTTTGCCAATTATCACAGTGGAATCCTTCTTTCGATCAAAAAA	536	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.132	0.617	2.172	2.247	1.180	1.110
Raw	551.273	4199.239	12294.410	19574.697	3711.490	3754.337

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_5096.1	920	5e-22	741 - 795	100	55 / 55	plus
Harvest21	ABC05902	629	3e-25	523 - 582	100	60 / 60	plus
Harvest21	ABC05903	648	1e-23	529 - 589	98	60 / 61	plus	ABC05903
Harvest35	U35_2490	660	3e-25	537 - 596	100	60 / 60	plus

Contig Sequence (660 bp)

>U35_2490 660 Hv_44K_v2
CACGCGTCCGAACACACACACCAGCTCTATCCCTCCCCCAACACCCTGACCTCCGAGCTG
TAGCCGATCCATCCATGGAGGCTTCACGCAGGCTCCTCTCGGCGGCGCTGCTCCTCGTGC
TGCTGCTCGCCGCCACAGGGGAGCTGGGAGGGCCGGTGATGGTGGCGGAGGCGCGGACGT
GCGAGTCGCGGAGCCACAGGTTCAGGGGCCCCTGCGTGCGCAGGTCCAACTGCGCCAACG
TCTGCAAGACCGAGGGCTTCCCCGACGGCAAGTGCCGCGGGTTCCGCCGCCGCTGCTTCT
GCACCACCCACTGCCACCATTAACCAACAGGCCTCTGCTTCGCGTCATGCATGCCTAGGC
TTCGTCCGCCCGTGCACGTACGACGACGGTGGCTGAACTGCGCCTCTCTCTTCCTGCGTG
CGTCCATGCGTGTCCATGAATAAGTCTCAGCTTGTCTCGGCAAGCTTCCCTTCTTCCTTT
TTTTTGTATGTTTGTTACGAGTGTGCACGAGTCGTTGTGTCTCGCTCGGTTCGTTCTCAG
AGTTTGCTGTAAGGTTTGCCAATTATCACAGTGGAATCCTTCTTTCGATCAAAAAAAAAA
AAATTTCTTCTTTGAAAATTGAAATCATGTGTGGTGTACTATATGCTTTACTCGGTTGCT

Homology of Contig U35_2490 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None