barSeed - Barley Seed Development Database

Probe CUST_38801_PI390587928

Source Contig U35_8398

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38801_PI390587928	Hv_44K_v2	TTTTTCTTCCTGCTGTATATACGTGTCGTCGATGATTTGTTGGTGTTGTTAGCGGCCGCT	769	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.055	1.753	1.536	0.931	0.490	0.562
Raw	61.598	158.253	119.729	112.368	21.003	26.467

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_8398	966	3e-25	770 - 829	100	60 / 60	plus

Contig Sequence (966 bp)

>U35_8398 966 Hv_44K_v2
AGAGCAGCAGCGGAGCCGAAGCAAATTGTACTACTACGCAGGAGTCGAGTCGAGGTAGCG
CGCGGCGGAGGCACACGCGCTTCTCGTGCCGCGGAGGAGGGGGCAGTAGCTTCGCGAAGG
TTCCGAGGCGGGAGGGGGCTGCTGGCGGGCGCCGGAAGCATGTTGGGGAGGGACGAGCTG
CTGCGGCGGAGCCTCGTGACGCTGGCGGCGGCCGTGGTGGTGACCGGGGTGGCCACGGCG
TCCGTGCGGAAGGCGCTCGCCACGTACGTCTTCGGCATCCTGGCCATCGCCGGCGTGCTG
CTCCCGGACTGGGAGTTCTTCGACCGCGACTTCTCCCAGTGGCTCACCCCCATGCCCGCC
TCCCGCCGCACGGCCGCCGCCGCCGCCGCCGAACGCGAGCACGACATTTGGAGATTTAAG
CCGTATCCACTTCGGATGGCCGTGCTCACGACGATCTACGGGTTCGGACTTTACAAGTGG
TGGACGTACGTATCTCACTGACGAGACAGGTCCAGGATCACCTCCTCTGTCTCTCTCATG
AAAGGAAAGATTTTGGGAGAGTAGTACCATCACATCGATCAGATTGCTTTGCCTTGCTTC
ATGGTCAGACAGTTTCACGTCTGTAGCTAATGGGTTTATACGCTGCCAACACGAAAACGC
CCGGTGGGGGAAAGGAACACCCGGCCGCAAGCTCATGTCTGTAGCTAAATGAGTTTTTGT
AATGTGCAAATGTCATTCTTAGATCAAAAGGAGTATTTTTTTTACTTCGTTTTTCTTCCT
GCTGTATATACGTGTCGTCGATGATTTGTTGGTGTTGTTAGCGGCCGCTGATGGAGCACC
GCTACGGCGCCAAGGACTTCATCACCAGCCAGGACACGCGCTTGCTCGTTCCGGGTACCT
ACTACCTCACCCATGTCGACTCCATGTACCGCCGGTTCTATGCCGTGGGGAAAATGCGGC
CGCTCG

Homology of Contig U35_8398 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None