barSeed - Barley Seed Development Database

Probe CUST_38798_PI390587928

Source Contig U35_13402

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38798_PI390587928	Hv_44K_v2	TCGAGTTCTGGTTCAAGCCATACTACCGACCACAGCCGCTGCAGCATCCGCCACCACCGT	584	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.234	1.001	2.224	1.897	0.826	0.721
Raw	10.658	12.063	26.024	35.214	4.346	3.112

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34604.2	1744	2e-24	621 - 680	100	60 / 60	plus	None
MLOC	MLOC_34604.1	1781	2e-24	686 - 745	100	60 / 60	plus	None
JLOC1	JLOC1_22332.1	1750	8e-25	686 - 745	100	60 / 60	plus
Harvest21	ABC23331	685	3e-25	585 - 644	100	60 / 60	plus
Harvest35	U35_13402	685	3e-25	585 - 644	100	60 / 60	plus

Contig Sequence (685 bp)

>U35_13402 685 Hv_44K_v2
ACTGCCCTCCTCCGAGGGAAAGGAAAAAAAACTCAAACCGAGGTTGCGAGTTGCGACCAC
GAGTGCGGCGGCGCTCCACCCACCTGTGCCCTAGTCCGGCCACCGTCCAGACATGGAGGC
GCGCGGTCCTAGTCGTAAGAGGACCAAATTTACGGCGCTCAAGACCCAAGAGGTGCTGCC
GGCCCCGGAGGCTTTGGAAGCCCCCGGCCACGGACCACCTCCCTCCGCCCACAACCAACA
ACCGCCGCCCGGAGTCGGGGACGACGAAGAAAGCGCCGACCTCATCAGCAACCTCCCCGA
CGCCATCCTCGGCGAGATCGTCTCCCGCCTACCCACCAATCAAGGCGCCCGCACCCAGAT
CCTCGCGTTCCGGTGGCGCCACATCTGGAGCTCCGCGCCTCTTAGTATCGACTGCGAAGG
CCTCGCCGCCGATAACGAGGTACTCGCTGGCATCGTCTCGCGCACGGTTTCAGCGCATCC
GCCCCCCTGCCGCCGCTTCTGCGTCCCCTCGTGCCTCCTCGGCGACCGAGCGTCTACGGT
GGACGGATGGCTCCGAACCCCCGCTCTGGACAACCTCCAGGAGCTCGAGTTCTGGTTCAA
GCCATACTACCGACCACAGCCGCTGCAGCATCCGCCACCACCGTCCATGTTCCGCTTCTC
GGCCACGCTCTGTGTTGCCACCATC

Homology of Contig U35_13402 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None