barSeed - Barley Seed Development Database

Probe CUST_38796_PI390587928

Source Contig U35_13405

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38796_PI390587928	Hv_44K_v2	TGCACTTCCCATTCTTCAGAAAAATGGCGTTGTTCATTTCCTCGGATTCGGTAACCGTCT	115	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366189	3870	2e-24	916 - 975	100	60 / 60	plus	ABC05478 ABC05479 ABC08824
MLOC	MLOC_67374.1	2689	2e-24	1423 - 1482	100	60 / 60	plus	None
MLOC	MLOC_67374.2	2531	2e-24	1289 - 1348	100	60 / 60	plus	None
MLOC	MLOC_67374.3	2510	2e-24	1268 - 1327	100	60 / 60	plus	None
JLOC1	JLOC1_44482.3	2593	8e-25	1294 - 1353	100	60 / 60	plus
JLOC1	JLOC1_44482.2	2576	8e-25	1277 - 1336	100	60 / 60	plus
JLOC1	JLOC1_44482.1	2643	8e-25	1344 - 1403	100	60 / 60	plus
Harvest21	ABC25135	472	3e-25	116 - 175	100	60 / 60	plus
Harvest35	U35_13405	473	3e-25	116 - 175	100	60 / 60	plus

Contig Sequence (473 bp)

>U35_13405 473 Hv_44K_v2
ACATTGTGAAAGATTTACCACCCCATCTTCAGTCGCTGGATCTCGAGGCAATCGGCAGCC
AAATCACCGATAACGAGATCACGAAAGAGGCTGAGCCATCTGAATTCATCAGAACTGCAC
TTCCCATTCTTCAGAAAAATGGCGTTGTTCATTTCCTCGGATTCGGTAACCGTCTCGGCT
TCGACTCGGTTCCTGCCGATCTGCAGAGGCTGCGGTGCAGATGCAACTTCCACGCACTCA
AGTTCGCCCCGGAGATCCAGAAGCTGGGCTCGCTGCTGGTCCAACGGCTGCGGGGGGTGA
GCGCGATGCAGACGGAGATGGACAAGCAGCTGTTCGGGAGCAACATGCTGGACCGGCCGT
TCGGGGATAAGGGCAGCGACGACGCCGGCGGGCCGACCAGGTACCTCGCCCTGCACATGA
GGTTCGAGGAGGACATGGTGGCCTACTCCCTCTGCGAGTTCNGCGGCGGCGAG

Homology of Contig U35_13405 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35410.1	604	8e-79	protein\|growth regulator related protein, putative, expressed
Brachypodium v1_2	Bradi1g40997.1	584	1e-82
Arabidopsis v10	AT1G29200.2	611	2e-51	O-fucosyltransferase family protein \| chr1:10208002-10210488 FORWARD LENGTH=611