barSeed - Barley Seed Development Database

Probe CUST_38789_PI390587928

Source Contig U35_13413

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38789_PI390587928	Hv_44K_v2	GCTGCCCTTATTCAGTCTGTAACATTGAGCACATACCAAATAAGACTTTGCACTAGTAAC	669	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.209	1.481	1.105	0.944	0.451	0.431
Raw	200.582	380.425	250.895	327.657	56.625	58.384

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17532.1	3218	2e-24	1200 - 1259	100	60 / 60	plus	ABC22279
JLOC1	JLOC1_12103.1	1325	8e-25	1193 - 1252	100	60 / 60	plus
Harvest21	ABC22279	762	3e-25	670 - 729	100	60 / 60	plus	ABC22279
Harvest35	U35_13413	762	3e-25	670 - 729	100	60 / 60	plus

Contig Sequence (762 bp)

>U35_13413 762 Hv_44K_v2
CGCCCAAGCCAATTCGGCGTTCCGCCTCCATGGACTCGCCGCTATTCCTTGTGGTTGTGC
CTGAAGTTCAGGGTGGTGCTCTACAGGCTAATCGCAAATTGCCGAGTGGTCGACCGATGA
GCATCTTCAGGGCGAAGGAGAAGGAGGCAGCAGGGACATCTTCATCCTCTTGTCAAGCAG
GCGGGTTCAGGATTGGCAGGTCCATGTCAAGCAGTGGTCGGGGATTGTTCTTTGCACGGA
ATGGGCGCTCCACTGGCAACGTGCTGCCACTGTGAGTTGGTGTAATTTTACTGTCAAGAG
GATACAGCCTCAGCAAAGCCGGGAGCTGGTAGTGTATCAGTGTCTGTTAATAGAGAGTGT
AGACGGGATAGCAGTGGCTCGGAGAGAAAGTCTCATCTGAAATCTGTGAGTTGACCAGAG
TTATTATCATGTGATAAGTATTTCTTGAGTGGATGTGCTCGTGTTAACTTGCATGCCCAA
GTTTCCTTTATCACAATGTCAACATCTAGCTCTGGTTAAGTGAATTTTGGGGAAGAAGCT
GATGGTTGGCTTCTTCATGTAATATTTATGTAGCAATCTTGCAAAGAGTGGACCACTGCC
TGCTTCAATGTATACTGTTCCTAGAAGGGGGTGGTGCAAATGTAAGAATCTGTCCTTTGG
GGAGGAGGGGCTGCCCTTATTCAGTCTGTAACATTGAGCACATACCAAATAAGACTTTGC
ACTAGTAACTGCATTTTTAAGAAAATAAAAAAAAAAAAAAAA

Homology of Contig U35_13413 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None