barSeed - Barley Seed Development Database

Probe CUST_38788_PI390587928

Source Contig U35_13414

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38788_PI390587928	Hv_44K_v2	AAGAAGTACTCCTTCGGCGGCTCGACCTGCCTCGCCAAGTACTGTGCCAAGAAGCTCCCG	141	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364821	2546	2e-24	704 - 763	100	60 / 60	plus	None
MLOC	MLOC_35916.3	450	2e-24	19 - 78	100	60 / 60	minus	None
MLOC	MLOC_35916.1	1178	2e-24	291 - 350	100	60 / 60	minus	None
MLOC	MLOC_35916.2	1088	2e-24	264 - 323	100	60 / 60	minus	None
JLOC1	JLOC1_23145.1	1135	8e-25	758 - 817	100	60 / 60	plus
Harvest21	ABC24033	634	3e-25	155 - 214	100	60 / 60	plus
Harvest35	U35_13414	623	3e-25	142 - 201	100	60 / 60	plus

Contig Sequence (623 bp)

>U35_13414 623 Hv_44K_v2
TACCTAGCGGAGTACGAGGCCATCTGCAGCAAAAAAGACATCGTCCTCATCGGGCGGGTG
ACGCCGGGGAGCTCGATCCAGAAGGTGCTGGTGAAGGAGGCCAAGCTCTGCGCGGCCATG
GTGGTGGTGATTGGCACCAACAAGAAGTACTCCTTCGGCGGCTCGACCTGCCTCGCCAAG
TACTGTGCCAAGAAGCTCCCGCCGACGACCAGCGTCGTCGCCATCCAGGGCGGCAAGGCC
ATCTTCGTCAGGGAGGCCCCCCGGCCGCCACTTGGAGCAGAGCCCAAGCCGGTGCTCCGC
ACGCTGCTGCACCCGAGCGTCGGCATGGAGCCCAAGGTGATCATCCCCAATCCCAACCGG
CGGAGCGCGCGGTCCATGGACTTGGACGCCGTGGGCTGCGGCCAGTGCGCCGCGCCGCAG
CTGACGAAGCCCTGCGACGACGACGGCAACACTGCCGATGCCGATGCCGATGCCAAGGCC
GTCGTCGTGCGCGCGCCGGCGGCGCCCGAGCAGAGGCTCGGCTGGCCGTTGCTCCGGCGC
GCGCCCGCCGCGTCCACGGCCACGGCGAGAGAGCACGAGGCGACGCGCAAGCAGTCGGTG
GTGCACTGGGTGATGAGCCTGCC

Homology of Contig U35_13414 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g13820.2	403	2e-83	protein\|protein kinase family protein, putative, expressed
Brachypodium v1_2	Bradi1g68487.1	653	9e-88
Arabidopsis v10	None